Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq13 120 2e-22 seq6 89.7 4e-13 seq15 87.8 1e-12 >seq4 Length=82398023 Score = 127 bits (140), Expect = 2e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||| ||| | |||| ||||| ||||||||||| || || |||||| | |||||||| Sbjct 48906065 CTCATCATGGCCGGTGTACTCTACAATTTCGGTACAAAGGTTACTGGACTTAATGGTGCC 48906124 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 || ||||| ||||| ||||| | |||||||| |||||||| ||||| || || || || Sbjct 48906125 CAGGTTCTGCTGATTGCTCTTCCTGTTGCATGCGTCCTTGTAAATCATATAGGGGGTACC 48906184 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 |||||| ||||||||||| ||||| ||||| Sbjct 48906185 CGTCTCAGTCTGGGACTCAATAATGGCATGCCA 48906217 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| |||||||| || || || |||||| | |||||||||| ||||| || Sbjct 46250993 GGTGTACTCTACAATTTCAGTACAAAGGTTACTGGACTTAATGGTGCCCAGGTTCTGCTG 46250934 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| | |||||||| |||||||| | ||| || || || || || ||| || Sbjct 46250933 ATTGCTCTTCCTGTTGCATGCGTCCTTGTAAAGCATATAGGGGGTACCCGTTTCAGTCTG 46250874 Query 66169 GGACTCAATGATGGCGTGCCA 66189 ||||||||| ||||| ||||| Sbjct 46250873 GGACTCAATAATGGCATGCCA 46250853 >seq13 Length=107758822 Score = 120 bits (132), Expect = 2e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| ||||| ||||| || || |||||| | ||||| |||| ||||| || Sbjct 78356150 GGTGTACTCTACAATCTCGGTACAGAGGTTACTGGACTTGATGGTTCCCAGGTTCTGATG 78356209 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||||| || | ||||| || |||||||| | |||||| || ||||| |||||| || Sbjct 78356210 GTTACTTTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCAGTCTG 78356269 Query 66169 GGACTCAATGATGGCGTGCCA 66189 ||||||||||||||||||||| Sbjct 78356270 GGACTCAATGATGGCGTGCCA 78356290 >seq6 Length=87043187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || || | ||||| || || ||| | || || | || ||||| || ||||||| Sbjct 51007489 TGGAGCGATTTACACAGGAAGTCCAGGTGACAGAAGCAAGATGCTTCTATGGTTTCCAGA 51007548 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||||||||||| ||||||| ||||||||||| | ||||| || || ||||||| Sbjct 51007549 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTCATTGACACCTACATCA 51007605 >seq15 Length=103963436 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| || || ||| |||| || | || ||||| || ||||| || ||||||||||| Sbjct 25930186 CAGGAAGTCCAGGTGACGGAAGCAAGATGCTTCTATGGTTTCCAAATCGCCATGGAGAAC 25930245 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||||||| ||||||||||| | ||||| || || ||||||| Sbjct 25930246 ATCCACTCTGAGATGTACAGCCTGCTCATTGACACCTACATCA 25930288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396443125449200