Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 4e-15 >seq18 Length=70695409 Score = 98.7 bits (108), Expect = 4e-15 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| | |||| || ||||||||| || ||| || | || ||||| | | ||||| Sbjct 7079738 CTCGATGAGCATGCCGATGGTCATGCGGGAAGGGAAGCCGTGAGGGTTGAACAGAATGTC 7079679 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 ||| ||| |||| | | |||||||||||||||| || | ||| ||||| | | Sbjct 7079678 GGGGGTCATGCCGCTCTCTGTGAAGGGCATGTCCTC--GGCAGGCCA-CAGGCGGCTCAG 7079622 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || ||||||||| |||||||||||| |||||||||||| Sbjct 7079621 GATGCCCTTCTGCCCGTGGCGGCTGGCGAACTTGTCCCC 7079583 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | |||| ||||||||| ||||||||||||| |||||||| ||||||| Sbjct 47832042 CTCCTTGAGACGCGGCACGCCCAGGGTGACGTTCTTGGCCGACACGCCGGCGTAGTGGAA 47831983 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||||||| ||| ||| |||||| || | ||||| | || | || || Sbjct 47831982 GGTGTTCAGGGTCATCTGGGTGGCGGGCTCTCCCAGCGACTGGGCAGCTAACGCCCCCAC 47831923 Query 349204 CATCTCGCCGGG 349215 ||||||||| || Sbjct 47831922 CATCTCGCCCGG 47831911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078386927994690