Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq144678 239 8e-61 seq12045 95.1 2e-17 seq60797 73.4 7e-11 >seq144678 Length=1950 Score = 239 bits (264), Expect = 8e-61 Identities = 204/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||| ||| |||| |||| |||||||||||||| Sbjct 1539 CTGTTACTTTGAAGAAATTAGAGTGCTCAATGCAAGCCTACGCTCTGAATACATTAGCAT 1598 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 1599 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 1657 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 1658 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1717 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 1718 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 1776 Query 311 GTTAGGGG 318 ||| |||| Sbjct 1777 GTTGGGGG 1784 >seq12045 Length=232 Score = 95.1 bits (104), Expect = 2e-17 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 119 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 60 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 |||||||||||| | || |||||| ||| |||||||| ||||||||| Sbjct 59 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC 7 >seq60797 Length=68919 Score = 73.4 bits (80), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATG 131 ||| ||||| ||||| | || ||||||||||||||| | ||| |||||| ||| | Sbjct 14001 TTTGCTTTGGAAAAAAT-GACTGTTCAAAGCAGGCCCAGTCGCTTGAATACTGCAGCTAG 14059 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT 169 ||| || ||||||||| || ||||||||||||| ||| Sbjct 14060 GAAAAAAGGAATAGGAC-TGTGGTTCTATTTTGTGGGT 14096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913771885312