Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13107 255 2e-65 seq61942 113 1e-22 seq74129 105 2e-20 seq10548 89.7 2e-15 seq113249 78.8 3e-12 >seq13107 Length=236 Score = 255 bits (282), Expect = 2e-65 Identities = 202/238 (85%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCG 132 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 236 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCCGGATCGGCCCG 177 Query 133 CGAAGGA---CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATT 188 | ||| |||| ||| ||| | || | ||| || ||||| ||||| || | Sbjct 176 CCGAGGCAGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCTTCCGATTCATGGAAT 119 Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCCCACTTAT 247 |||||||| |||| ||| ||||||||||||||||| ||||| | ||||||||||||| Sbjct 118 AAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCGGCTCCCACTTAT 59 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 ACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 1 >seq61942 Length=13164 Score = 113 bits (124), Expect = 1e-22 Identities = 136/190 (72%), Gaps = 30/190 (16%) Strand=Plus/Plus Query 312 CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 ||||||||| |||||||| |||| |||||||||||||| || ||| ||| ||||||| Sbjct 3764 CCGCTGATTTTGCCAAGCCTGTTCACTTGGCTGTGGTTTTGCAAGAGGGTATGTAGGGAC 3823 Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||| |||||||||||||| || ||||| |||||||| | | Sbjct 3824 AGTGGGAATC-------TCCATTCATGCGCG--------TATATGACAAGGCATTTAGAT 3868 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||| |||| || |||||| |||| | ||||| ||||||||| Sbjct 3869 TCCTTTTGAGA---------------ACCATTTACCTGCGCCTCATTGAACTTCTTCACT 3913 Query 492 TTGACATTCA 501 |||||||||| Sbjct 3914 TTGACATTCA 3923 >seq74129 Length=6503 Score = 105 bits (116), Expect = 2e-20 Identities = 102/127 (80%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTT-GGCTGTGGTTTCGCTAGATAG 360 ||||||| | ||||||||| || ||| |||||||| |||||||||||| | | | Sbjct 5309 TCTTCTT-CTTCGCTGATTCTGCTGAGCTCGTTCCCTGCGGCTGTGGTTTCTCCCGGG-G 5252 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 || || |||||| ||||| ||||| ||||||||| |||| ||| |||||||||||||| Sbjct 5251 TATTTAAGGACAGCGGGAAATTCGTTCATCCATTCACGCGCTTCAGTAATTAGATGACGA 5192 Query 421 GGCATTT 427 ||||||| Sbjct 5191 GGCATTT 5185 >seq10548 Length=227 Score = 89.7 bits (98), Expect = 2e-15 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| || |||| || || |||| | |||| |||||||||||||| Sbjct 125 CTTTTACTCTACGCCAGGTTTCCGTCCTGGCTGAGCTCACCTTGGGACACCTGCGTTACC 184 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||| |||||||| ||||||||| |||||||||| ||||||| Sbjct 185 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACA 226 >seq113249 Length=4682 Score = 78.8 bits (86), Expect = 3e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 173 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAAC 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632648368512