Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq77734 212 5e-50 seq142225 138 9e-28 seq89243 107 2e-18 >seq77734 Length=62899 Score = 212 bits (234), Expect = 5e-50 Identities = 607/925 (66%), Gaps = 14/925 (2%) Strand=Plus/Minus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || |||| ||| || | ||| || ||||||| ||| || | |||||||| ||||| Sbjct 11511 AGTGCAATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTTGTATACTCCACAATC 11452 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||||| |||||||| ||||||||||||||||| || |||||||| | || Sbjct 11451 TCTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTA 11392 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||| ||||||| |||||| ||||| || ||||| || ||||| |||||||| Sbjct 11391 CAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCA 11332 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCG 66244 | ||| | | ||||| || ||| | | || || | | ||||| | | Sbjct 11331 TACCACACCTGCTGAGCCTTGACTACCCGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTG 11272 Query 66245 TAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACAC 66304 || || | || || || ||||| || ||| | || |||| || ||| Sbjct 11271 TACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCAC 11212 Query 66305 ATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGG 66364 |||| ||||| || | | ||| || | ||| || | |||||| ||||| ||| Sbjct 11211 ATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGG 11152 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAG 66423 || |||||||| || ||||| | |||||||| | || ||| ||||| || || || Sbjct 11151 GCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTG-TTTTTCTTTAACTCAAG 11093 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 ||| ||||| | ||| |||||||| |||||||| ||||| || | ||| ||||| Sbjct 11092 GAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTT 11033 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 |||||||||||| ||||| || || ||||| | || | || ||| || || || Sbjct 11032 ATTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAG 10973 Query 66544 CCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAAC 66603 || || || || ||||| || || | ||| | ||| || | || | ||| Sbjct 10972 GCCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAAC 10913 Query 66604 ATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAA 66663 | |||||| || || || | || |||||| ||||| | | ||| | Sbjct 10912 TGCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATA 10853 Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGGT 66721 ||||| |||||| |||| |||| |||| ||| ||| |||| || | || |||||| Sbjct 10852 AATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGA--GAGCTGGGGT 10795 Query 66722 TTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATG 66781 || ||| | || ||| || ||||| | || || || || | | ||||| Sbjct 10794 CTGTTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGC 10735 Query 66782 TAATTGTACGTCTCGATGACAGCATCAATGT---TTTCGCCATGAATCCCGAGTGCACAT 66838 ||||| ||||| ||| | || ||||| | ||| | || || || | || | Sbjct 10734 AGGTTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTG---TGGATTCCAACAGCTACT 10678 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGA 66897 | ||| || | | ||| || || || ||| | ||| ||||| | || | |||||| Sbjct 10677 CTCATGAGCATATGTTGTGGACGCTCAGCCA-CTTTTCCATTGATTTTCAGCAGGTAGGA 10619 Query 66898 GCGTTCCAGGGTCTTGATACCAAAG 66922 ||| || ||||| || | |||||| Sbjct 10618 GCGCTCTAGGGTTTTAAAGCCAAAG 10594 >seq142225 Length=5922 Score = 138 bits (152), Expect = 9e-28 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||||||| ||| ||||||| || ||||||||||| ||||||| Sbjct 2114 TGGAGCGCTTCATGCAGGAGGTGCAGGTGACGGAGGCTCGGTGTTTCTACGGGTTCCAGA 2173 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| |||||||||||| | |||||||| || ||||||| || Sbjct 2174 TCGCCATGGAGAACATCCACTCAGAGATGTACAGTCTGCTCATCGACACCTACATCAAGG 2233 Query 61376 A 61376 | Sbjct 2234 A 2234 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | |||||||| |||| | || || ||| ||||||| Sbjct 1453 GAGAACCCACGGCGCTTCGTCATCTTCCCCATTCAGTACCACGACATCTGGACCATGTAC 1512 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 1513 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 1550 >seq89243 Length=32234 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || || || ||||| || |||||||| || ||| | |||||||| |||||||| || Sbjct 17034 GTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGG 17093 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | ||||||||||| ||||| | |||||| || || || ||||| || Sbjct 17094 TTACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTGT 17153 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||| ||||| | ||| || | ||||||||| Sbjct 17154 GACTCAATAATGGCATACCACAGCTGCTGGGCCTTCACC 17192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396811910644160