Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3953 178 2e-42 seq3890 82.4 1e-13 seq4053 73.4 6e-11 >seq3953 Length=1850374 Score = 178 bits (196), Expect = 2e-42 Identities = 185/235 (79%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 289522 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 289465 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| |||||| | |||| | || Sbjct 289464 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCAATCACGGTTGGGGTTCAGCGGGTT 289405 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 ||||| ||||||||| |||| | || ||||| | || ||||||| |||||||||| Sbjct 289404 ACCCGCGCCTGTCGGCGAAGGGTAGGCACACGTTGC-TCCACTCAGTGTGGCGCGCGTGC 289346 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 289345 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 289292 >seq3890 Length=8087411 Score = 82.4 bits (90), Expect = 1e-13 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 73 CAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGT 131 ||| ||||||||| | ||||| |||| | |||| || |||||| ||||| Sbjct 4580415 CAATAATTGCAATCCCCAATCCCATTCACAGTTGGGGTTCAGCGAGTTACCCTCGCCTGT 4580356 Query 132 CGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 |||| |||| | | || || | || ||||||| ||| |||||| |||| | |||| Sbjct 4580355 CGGCGAAGGGTAGGCATACGCTGC-TCCACTCAGTGTGGCGTGCGTGCAGCCCTGGACAT 4580297 Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||||||||||||||||||| ||||| Sbjct 4580296 CTAAGGGCATCACAGACCTGTTATT-CCTCA 4580267 >seq4053 Length=10105622 Score = 73.4 bits (80), Expect = 6e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||| | |||||||| |||| | | |||||| ||||||||||||||||||||| ||| Sbjct 361992 TCAGTGTGGTGCGCGTGCAGCCCCGGATATCTAAAGGCATCACAGACCTGTTATTG-CTC 361934 Query 221 AAACT 225 || || Sbjct 361933 AATCT 361929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751964893585