Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3953 248 1e-63 seq3890 100 5e-19 seq4053 73.4 6e-11 seq3892 73.4 6e-11 >seq3953 Length=1850374 Score = 248 bits (274), Expect = 1e-63 Identities = 214/260 (82%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 7 GTGGCTCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 65 || ||||| ||||||| |||||||||| |||| | |||||||||||||||||||||||| Sbjct 289373 GTTGCTCCACTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTG 289314 Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCA 125 |||||| ||||| | || |||||| | ||| | |||||||||||||| ||| || Sbjct 289313 TTATTG-CTCAATC-TCGTGTGGCTGAATTCCACTTGTCCCTCTAAGAAGTTGGCCGCCG 289256 Query 126 ACCATAGTCGATGGG-------GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| ||| ||| |||||||||| | |||||||||||||||||||| Sbjct 289255 ACC--GCTCG--GGGCCCCGTAACTATTTAGCATGCGGGAGTCTCGTTCGTTATCGGAAT 289200 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | Sbjct 289199 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGA 289140 Query 239 GAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| Sbjct 289139 GAAAGAGCTATCAATCTGTC 289120 >seq3890 Length=8087411 Score = 100 bits (110), Expect = 5e-19 Identities = 85/101 (84%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| ||| |||||| |||| | ||||||||||||||||||||||||||||| |||| Sbjct 4580326 TCAGTGTGGCGTGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATT-CCTC 4580268 Query 76 AAACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | || ||| |||||| | |||| | |||||||| ||||| Sbjct 4580267 AGTCT--CATGTGGCTGAATGCCACTTGTCCCTCTGAGAAG 4580229 >seq4053 Length=10105622 Score = 73.4 bits (80), Expect = 6e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| | |||||||| |||| | | |||||| ||||||||||||||||||||| ||| Sbjct 361992 TCAGTGTGGTGCGCGTGCAGCCCCGGATATCTAAAGGCATCACAGACCTGTTATTG-CTC 361934 Query 76 AAACT 80 || || Sbjct 361933 AATCT 361929 >seq3892 Length=4365015 Score = 73.4 bits (80), Expect = 6e-11 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| |||||| ||||||||| ||||||||||| Sbjct 3522302 GGCCATGCACCACCACCCACAGAATCGAGAAAGAGCCATCAATCTGTC 3522349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796762802139