Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3953 185 2e-44 seq3890 91.5 3e-16 seq4053 80.6 5e-13 >seq3953 Length=1850374 Score = 185 bits (204), Expect = 2e-44 Identities = 198/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | |||| || | ||||| |||||||||||||||| Sbjct 289266 CTTCTTAGAGGGACAAGTGGAATTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 289323 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | ||||| || | | Sbjct 289324 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGAGCAACGTGTGCCTAC 289383 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| |||||| | | || | | |||| | ||||| | | |||| Sbjct 289384 CCTTCGCCGACAGGCGCGGGTAACCCGCTGAACCCCAACCGTGATTGGGATCGGGGATTG 289443 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 289444 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 289503 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 289504 AAGTCCCTGCCCTTTGTA 289521 >seq3890 Length=8087411 Score = 91.5 bits (100), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||| |||||||| | ||| ||| | ||| || ||||| |||||||||||||| Sbjct 4580229 CTTCTCAGAGGGACAAGTGGCATTCAGCCACATG--AGACTGAGG-AATAACAGGTCTGT 4580285 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| |||||| ||| ||||||| | || || | | | Sbjct 4580286 GATGCCCTTAGATGTCCAGGGCTGCACGCACGCCACACTGAGTGGAGCAGCGTATGCCTA 4580345 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATAGAGCAT 248 |||| |||| ||| |||||| || | | ||| | | ||| ||||| | | || Sbjct 4580346 CCCTTCGCCGACAGGCGAGGGTAA-CTCGCTGAACCCCAACTGTGAATGGGATTGGGGAT 4580404 Query 249 TGCAATTATTGC 260 |||||||||||| Sbjct 4580405 TGCAATTATTGC 4580416 >seq4053 Length=10105622 Score = 80.6 bits (88), Expect = 5e-13 Identities = 125/176 (71%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||||| |||||| | | |||| |||||||| | || Sbjct 361929 AGATTGAG-CAATAACAGGTCTGTGATGCCTTTAGATATCCGGGGCTGCACGCGCACCAC 361987 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| | ||| | || | | |||| | | ||| ||||| | | || | Sbjct 361988 ACTGAGTGGAGCAATGTGTGCCTACCCTTCACTGACAGGCGCAGGTAACCCACTGAACCC 362047 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 | || | | ||||| | |||||||||||| | | | || ||||||||||||| Sbjct 362048 CAACCGGGATTGGGATCGGAGATTGCAATTATT-CCCATGAATGAGGAATGCCTAG 362102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947154354432