Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4492 423 6e-116 seq3912 210 7e-52 seq3887 192 2e-46 seq4414 174 5e-41 seq3944 123 8e-26 seq4056 98.7 3e-18 seq4633 91.5 5e-16 >seq4492 Length=11537332 Score = 423 bits (468), Expect = 6e-116 Identities = 325/390 (83%), Gaps = 33/390 (8%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 |||| ||| | ||||| ||||||||||||| ||||||||||||||| || ||| | Sbjct 8583666 CCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGACGGCCGGAG 8583725 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | |||||||||||||||||||||||| ||| |||||| | | ||||||||||||||| Sbjct 8583726 C--CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCT 8583783 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 8583784 CAACGGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCATGGCTGTGGTTTCGC 8583843 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||||||||| |||||||||||||||||| | | ||||||||||| |||||||||||||| Sbjct 8583844 TAGATAGTAGGTAGGGACAGTGGGAATCTTGGTTATCCATTCATGTGCGTCACTAATTAG 8583903 Query 414 ATGACGAGGCATTT---------------------------GGC---TACCTTAAGAGAG 443 |||||||||||||| ||| | ||||||||||| Sbjct 8583904 ATGACGAGGCATTTACCCATCGGGTCCATTCCAGGTTGAAGGGCCCGTCCCTTAAGAGAG 8583963 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| Sbjct 8583964 TCATAGTTACTCCCGCCGTTTACCTGCGCATCATTGAATTTCTTCACTTTGACATTCAGA 8584023 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||| ||||||||| Sbjct 8584024 GCACTGGGCAGAAATCACATCGCGTCAACA 8584053 >seq3912 Length=9171075 Score = 210 bits (232), Expect = 7e-52 Identities = 137/152 (90%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 2688335 TAGAGTCAAGCTCAACAGGGTCTCCTTTCCCTGCTGATTCCGCCAAGCCCGTTCCCTTGG 2688276 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 2688275 CTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGC 2688216 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||| ||| ||||| ||||||||| Sbjct 2688215 ATCAC--------TGATGAGGCTTTTGGCTAC 2688192 >seq3887 Length=12445687 Score = 192 bits (212), Expect = 2e-46 Identities = 114/119 (96%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT 374 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2009713 CTAATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGT 2009654 Query 375 GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 2009653 GGGAATCTCGTTCATCCATTCATGCGCGTCCCTAATTAGATGACGAGGCATTTGGCCAC 2009595 >seq4414 Length=3345274 Score = 174 bits (192), Expect = 5e-41 Identities = 190/251 (76%), Gaps = 16/251 (6%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGG-TAGTGGTATTTCACTTGCGCCGAAACGGCT 238 ||| || |||||| |||| || | | || ||| ||||||| || | | || || Sbjct 2805230 TCACTGTGTAAGTATAAAAGAAATGATGACTAATGGCATTTCACCAGCAGCCAGACC-CT 2805172 Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||| ||||||||||||||||| | | ||||| ||| |||||| |||||||||||| Sbjct 2805171 CCCATTTATTCTACACCTCTCATGACTCTTCACGGTGTCACACTAGAATCAAGCTCAACA 2805112 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 ||||||||||| || |||||||||| |||| || ||||||||||||||||||| ||| Sbjct 2805111 GGGTCTTCTTTTCCTGCTGATTCCGTCAAGTCCATTCCCTTGGCTGTGGTTTCACTA--- 2805055 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||| |||||||| || |||||||||| | |||||||||| ||||| Sbjct 2805054 ----------GACAGTAGGAATCTCATTTATCCATTCATATGTGTCACTAATT-GATGAT 2805006 Query 419 GAGGCATTTGG 429 | |||||||| Sbjct 2805005 AAAGCATTTGG 2804995 >seq3944 Length=7472358 Score = 123 bits (136), Expect = 8e-26 Identities = 124/159 (78%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||| || || || ||| ||||||||| || ||| ||||||| || | | | Sbjct 5150599 TAGGGACACTGACAACCTTGTTCATCCATTCAGGCAGGTC-CTAATTAAATAAATA---A 5150544 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||| ||||||| ||||| ||||||| || ||| || | |||||| Sbjct 5150543 TTTGGCTACCTTAACAGAGTCACAGTTATTCCCGCCATTAACCTTTGCCTCACTGAATTC 5150484 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||| |||||||||| || ||||||||||| |||||| Sbjct 5150483 CTTCATTTTGACATTCTGATAACTGGGCAGAAGTCACAT 5150445 >seq4056 Length=207551 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | |||||||| ||| | |||| Sbjct 191378 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGATACCCGTGTTACC 191319 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||||||| | ||||||| ||| ||||||||||| || |||| Sbjct 191318 GTTTGACAGATGTACTGCCCCAGTCAATCTCCCCACCTGCCACTGTC 191272 >seq4633 Length=9790078 Score = 91.5 bits (100), Expect = 5e-16 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 || ||| ||||| |||| ||||||| ||| |||| | | ||||||||||||||| Sbjct 982462 GACCTTCTGCTCCCTGGGAGGTTTCTGTCCTCTCTGAGCTCGCTTTAGGACACCTGCGTG 982521 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | |||| |||| ||| | ||||||| ||||||||||||||| || |||| Sbjct 982522 ACCGTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCTGCCACTGTC 982571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635121199712