Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4119 212 2e-52 seq3934 185 3e-44 seq4108 152 2e-34 seq4643 127 6e-27 seq3899 77.0 1e-11 >seq4119 Length=3091371 Score = 212 bits (234), Expect = 2e-52 Identities = 307/428 (72%), Gaps = 44/428 (10%) Strand=Plus/Plus Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 ||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||| Sbjct 813637 CGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTTTTCAGGCTCCATCTCCAGAATCGAAC 813696 Query 148 CCTAATTCCCC-GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 ||| ||||||| ||||||| ||||||||| | ||||||| ||||||| Sbjct 813697 CCTGATTCCCCCGTTACCC---------ATGGTAGGCACAGAAAGTACCATCAAAAGTTG 813747 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC-CATGCGATTCG--TTAAGT 263 |||| ||||| ||| | || | ||||| | ||| | ||||| | | | || Sbjct 813748 ATAGAGCAGACATTCAAGAGAGACGTCGCCACCAGGAGGGGCGCGCGATCGGCCTGAGGT 813807 Query 264 TATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCC 323 ||| || ||||||| ||| ||| || |||||| ||| | Sbjct 813808 TATCTAGAGTCACCAA--AGC-------GGC-------------CTGATAAATGCACGCA 813845 Query 324 TTCC--GAAGTCGGGGTT--TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 | || || ||| | | | |||| ||||||||||||||||||||||||| |||||||| Sbjct 813846 TCCCCAGAGGTCAGCGCTCGTTTA-CATGTATTAGCTCTAGAATTACCACAGTTATCCAA 813904 Query 380 GTA---GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA 436 ||| || || |||||| || ||||||||||||||||||||| |||||| | Sbjct 813905 GTAACGGTTGGGAGTGATCAAAGGGACCGTAACTGATTTAATGAGCCATTTACAGTTTTA 813964 Query 437 CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 496 ||||| | | |||| | || ||||||||||||||||||||||||||||||| | Sbjct 813965 CTGTACCGGCCATTCGTACTCACACTTGCATGGCTTAATCTTTGAGACAAGCATATG-TT 814023 Query 497 ACTGGCAG 504 |||| ||| Sbjct 814024 ACTGCCAG 814031 >seq3934 Length=10166745 Score = 185 bits (204), Expect = 3e-44 Identities = 151/182 (83%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||| ||||| | || || ||| ||||||| ||||| | |||| ||||| Sbjct 1647071 GTACTCATTCCAGTTACAGGGCCTTAA-GAGTCCTGTATTGTTATTTTTCGTCAATACCT 1647129 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||| ||| ||| ||||||||||||||||| ||||||||||| | ||||| ||| Sbjct 1647130 CCCCGCGTCAGGAGTGGATAATTTGCGCGCCTGCTCCCTTCCTTGGAAGCGGTAGGGGTT 1647189 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||| ||||||||||||||||||| ||||| ||||||||| | ||| ||||| Sbjct 1647190 TCTCAGGCTTCCTCTCCGGAATCGAACCCCGGTTCCCTGTTACCCGTGGTCACCGTGGTA 1647249 Query 181 GG 182 || Sbjct 1647250 GG 1647251 >seq4108 Length=9752699 Score = 152 bits (168), Expect = 2e-34 Identities = 101/112 (90%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||||||| ||||| | |||||||||||||| || ||| ||||||||||| Sbjct 5536246 AAAGAGTCCTGTATTGTTATTTTTCATCACTACCTCCCCGCATCAGGAGTGGGTAATTTG 5536305 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5536306 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 5536357 >seq4643 Length=11069196 Score = 127 bits (140), Expect = 6e-27 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 6423804 AATTTGCACGCCTGCTACCTTCCTTGGATGTGGTAGCTGTTTCTCAGGCTCCCTCTCCAG 6423745 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||| || ||| |||| | ||||||||| || | ||| ||||| Sbjct 6423744 AATCAAAACCTGATTCTCTGTTACCCGTGGACAACATAGTAGG 6423702 >seq3899 Length=9633309 Score = 77.0 bits (84), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAG-ACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||| || | ||| | || || ||| ||||| || ||||| ||| ||||||||||| Sbjct 6576213 TCATTGCACTGACAGGGACTCAGAAGGTACCTGTGTCCTTATTTTTTGACACTACCTCCC 6576272 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGC--CTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || || || ||| | |||| | || |||||||||||||| |||| ||| |||||| Sbjct 6576273 TGTATCAAGAATGGATTATTTATGTGCATCTGCTGCCTTCCTTAAATGTCGTAACCGTTT 6576332 Query 122 CTCAGG 127 ||||| Sbjct 6576333 TTCAGG 6576338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510327213824