Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scleropages_20formosus_20[refseq_20GCF_5F001624265.1_202016-04-20] 4,819 sequences; 777,359,276 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3898 98.7 8e-16 seq3989 95.1 1e-14 >seq3898 Length=2399012 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| |||| || || || ||||| ||||| |||||||||| ||||| || Sbjct 243223 GGTGTACTCCACAACCTCTGTACATAGATTGCTGCACTTAATGGTGCCCAGGTTCTGCTG 243164 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || ||||| |||||||| ||||||||||| | |||||| || ||||| ||||| Sbjct 243163 GTTGCTCTTCCGATTGCAGGCATCCTTGTAGAGCATGTATGGTGTGCCAGTCTC 243110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 65157 CATAGAAATGCATCGATGATAATTTTGC-ATAATTCGGCTCGGCCACATGCATATTCAAC 65215 ||||||| ||||| | || | | |||| ||| || ||||| || | || ||||| | | Sbjct 245407 CATAGAAGTGCAT-GCTGGTCAACTTGCCATAGTTAGGCTCAGCAATGTGGATATTAAGC 245349 Query 65216 GACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCC 65275 ||||| |||||||| ||| | |||||| || |||||||| | ||| | | | || Sbjct 245348 GACTGGCTCTGATCTATGAATGCACCACGGTCGGCAGCCATCTTAATCACA-GTTTTCTG 245290 Query 65276 -GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTC 65334 || ||||||||||| ||||| ||||| | || || ||||||||| ||||| || Sbjct 245289 AGAAATCTCCCAGACAGTCTTATACAGCTGCTTTATATCCTCTGGAATCTCTTCAATCTC 245230 Query 65335 CT 65336 || Sbjct 245229 CT 245228 >seq3989 Length=9007450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| |||||||| || ||| | || || || |||||||| || || || | Sbjct 3293782 TGGAGCGTTTCAGCCAGGAGGTACAGGTGACAGAAGCCCGCTGTTTCTATGGTTTTCAAA 3293723 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||||||||||||| ||||||| || |||||||| | || || || || ||||||| Sbjct 3293722 TTGCCATGGAGAACATCCACTCAGAAATGTACAGCCTCCTTATTGACACCTACATCA 3293666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544650210160