Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq817 122 4e-25 seq144 122 4e-25 seq6348 118 4e-24 seq2993 116 2e-23 seq558 114 5e-23 seq317 114 5e-23 seq4142 111 7e-22 seq481 111 7e-22 seq605 109 2e-21 seq8401 102 3e-19 seq3923 102 3e-19 seq908 102 3e-19 seq2422 91.5 6e-16 seq749 80.6 1e-12 seq850 77.0 1e-11 >seq817 Length=291455 Score = 122 bits (134), Expect = 4e-25 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 106734 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 106675 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| | ||||||| ||||||| | | |||| ||||||| |||||| | Sbjct 106674 ACCGGCACRRGRCCGATAGTCGACAAGTACCYTAAKGGAAAKTTGAAAAGAACTTTGAAG 106615 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||||| ||| || || Sbjct 106614 AGAGAGTTCAAGAGGGCGTGAAATCGTTGAGAGGTAAACG 106575 >seq144 Length=754442 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | | ||| |||||| | | ||||| ||||||| Sbjct 553762 GAGTCGGGTTGTTTGGGAATGCAGCCCAAGGCGGGCGGTAAACTCCATCTAAGGCTAAAT 553821 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 553822 ACCGGCACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 553881 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 553882 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 553921 >seq6348 Length=2473 Score = 118 bits (130), Expect = 4e-24 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 |||| |||||| |||||||||||||||||| | || ||| |||||| | | ||||| Sbjct 77 CTTCTMGGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAG 136 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| ||| ||||||||||| ||||||| | | ||||| ||||||| || Sbjct 137 GCTAAATACCGGCACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAAC 196 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| | |||||||| || || | ||||| |||| ||| || Sbjct 197 TTTGAAGAGAGAGTTCAAGAGGGCATGAAACCTTTGAGAGGTAA 240 >seq2993 Length=46213 Score = 116 bits (128), Expect = 2e-23 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||||||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 14565 GAGTTGGGTTGTTTGGGAATGCAGCCCAAAGCGGTTGGTAAACTCCATCTAAGGCTAAAT 14506 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| | ||||| |||||| | Sbjct 14505 ACCGGCACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTCAAAAGAACTTTGAAG 14446 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 |||||||| || || ||||||||| |||| ||| Sbjct 14445 AGAGAGTTCAAGAGGGCGTGAAATTATTGAGAGG 14412 >seq558 Length=353908 Score = 114 bits (126), Expect = 5e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 330965 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 330906 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||| ||||||| | | |||| ||||||| ||| || | Sbjct 330905 ACCGDCACGAGACCGATAGTCGACAAGTACCTTAAAGAAAAGTTGAAAAGAACTGTGAAG 330846 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 330845 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 330806 >seq317 Length=644633 Score = 114 bits (126), Expect = 5e-23 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | | ||| |||||| | | ||||| ||||||| Sbjct 480442 GAGTCGGGTTGTTTGGGAATGCAGCCCAGAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 480383 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 480382 ACCGGCACGAGACCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 480323 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 480322 AGAGAGTTCAAGAGGGCGTGAAA 480300 >seq4142 Length=30137 Score = 111 bits (122), Expect = 7e-22 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102 ||| |||||||||||||||||| | || ||| || ||| | | ||||| |||||||| Sbjct 870 TCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGKGGKAAACTCCATCTAAGGCTAAATACY 811 Query 103 GGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGA 162 ||| ||||||||||| ||||||| | | ||||| |||||| |||||| | ||| Sbjct 810 GGCAYGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAACAACTTTGAAGAGA 751 Query 163 GAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| || || | ||||| ||||| ||| || || Sbjct 750 GAGTTCAAGAGGGCTTGAAACCGTTGAGAGGTAAACG 714 >seq481 Length=400265 Score = 111 bits (122), Expect = 7e-22 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||| ||||||| Sbjct 281268 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTGGGGCTAAAT 281327 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 281328 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 281387 Query 160 AGAGAGTTAAAAAGCACGTGA 180 |||||||| || || ||||| Sbjct 281388 AGAGAGTTCAAGAGGGCGTGA 281408 >seq605 Length=336214 Score = 109 bits (120), Expect = 2e-21 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 187202 GAGTCCGGTTGTTTGGGAATGCAGCCCGAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 187143 Query 100 ATTGGCCAGAGACCGATAGCG--CACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 | ||| | |||||| || | ||||||| | | ||||| ||||||| |||||| Sbjct 187142 ACCGGCACGGGACCGAGAGAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGA 187083 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | |||||||| || || ||||||| ||||| ||| || || Sbjct 187082 AGAGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 187041 >seq8401 Length=1234 Score = 102 bits (112), Expect = 3e-19 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 777 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCCGGTGGTAAACTCCATCTAAGGCTAAAT 836 Query 100 ATTGGCCAGAGA--CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 | ||| |||| ||||||| | ||||| | | ||||| ||||||| |||||| Sbjct 837 ACCGGCACGAGACCCCGATAGTCGAAAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGA 896 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 | |||||||| | || ||||||| ||||| Sbjct 897 AGAGAGAGTTCRAGAGGGCGTGAAACCGTTGA 928 >seq3923 Length=22321 Score = 102 bits (112), Expect = 3e-19 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| ||||||||||| |||||| | || | | |||||| | | ||||| |||||||| Sbjct 19980 AGTCGGGTTGTTTGGGATTGCAGCCCAAAGCGAGTGGTAAACTCCATCTAAGGCTAAATA 20039 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| ||||| |||||| ||||||| | | ||||| ||||||| |||| || Sbjct 20040 CCGGCAAGAGATCGATAGTCGACAAGTACCTTTAGGGAAAGCTGAAAAGAACTT----AA 20095 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| || || ||||||| ||| | ||| || || Sbjct 20096 GAGAGTTCAAGAGGGCGTGAAACCGTTTAGAGGTAAACG 20134 >seq908 Length=276159 Score = 102 bits (112), Expect = 3e-19 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||| | |||||||||||||||||| | || ||| |||||| | ||||| ||||||| Sbjct 9483 GAGWAGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCYATCTAAGGCTAAAT 9542 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 9543 ACCGGCACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 9602 Query 160 AGAGAGTTAAAAAGCAC 176 |||||||| || | ||| Sbjct 9603 AGAGAGTTTAAGACCAC 9619 >seq2422 Length=113570 Score = 91.5 bits (100), Expect = 6e-16 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||| |||||||| | || | |||||| | | ||||| ||||||| Sbjct 35656 GAGTCGGGTTGTTYKKKAATGCAGCCCAAAGCKGKTGGTAAACTCCATCTAAGGCTAAAT 35715 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| ||| || | Sbjct 35716 ACCGGCACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTCTGAAG 35775 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 35776 AGAGAGTTCAAGAG 35789 >seq749 Length=273145 Score = 80.6 bits (88), Expect = 1e-12 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 180749 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 180808 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | ||| |||||| |||| ||||||| Sbjct 180809 ACCGGCACGAGACCAATAGTCGACAAGTA 180837 >seq850 Length=244436 Score = 77.0 bits (84), Expect = 1e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| ||| ||||||||||| ||||||| | | ||||| ||||||| || Sbjct 22225 GCTAAATACCGGCACGAGACCGATAGTTGACAAGTACCTTAAGGGAAAGTTGAAAAGAAC 22284 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| | |||||||| || || ||||||| ||||| ||| || || Sbjct 22285 TTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 22331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079775010950