Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq475 289 5e-76 seq652 279 9e-73 seq4151 212 1e-52 seq813 181 2e-43 seq5107 159 6e-37 seq5673 156 7e-36 seq641 104 4e-20 seq1759 102 1e-19 seq287 89.7 9e-16 seq1279 78.8 2e-12 >seq475 Length=460035 Score = 289 bits (320), Expect = 5e-76 Identities = 213/250 (85%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 374157 AAACTAACCTGTCTCACGACGGTCTAAVCCCAGCTCACGTTCCCTATTAGTGGGTGAACA 374098 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 | |||||||| | |||||||||| |||||||||||||||||| |||||||| | | Sbjct 374097 AKCCAACGCTAGGTGGATTCTGCTTCACAATGATAGGAAGAGCCGACGTCGAAGGAACGA 374038 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 374037 AAAGCGTCGTCGCTATGAACGCTTGGCHGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 373978 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| || ||| || | ||| | | | | | |||||| ||||| ||||||||||| Sbjct 373977 CTGACATCTCCTGCTTAAAACCCCAAAAGTCAGATGGATCGTGAGGCCCCACTTTCATGG 373918 Query 285 TTTGTATTCA 294 | |||||||| Sbjct 373917 TCTGTATTCA 373908 >seq652 Length=301194 Score = 279 bits (308), Expect = 9e-73 Identities = 184/204 (90%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||| | Sbjct 276370 TCATCAGTAGGGTAAAACTAAACTGTCTCACGACGGTCTAAACTTAGCTCAAGTTCCCCA 276429 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| ||||||||||||| ||| ||| ||||||||| Sbjct 276430 TTAGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCGCAATGGTAGAAAGAGCCGA 276489 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 276490 CATCTATGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 276549 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||| |||||| Sbjct 276550 CTGTGGTAACTTTTCTCACACCTC 276573 >seq4151 Length=23690 Score = 212 bits (234), Expect = 1e-52 Identities = 161/189 (85%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||| |||| |||||| | ||||||| ||| ||||||| ||||||||||||| |||||| Sbjct 22261 AACGAACCCGTCTCACGGCGGTCTACACC-AGCTCACCTTCCCTATTAGTGTATGAACAG 22203 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||||||||| |||||||||| | ||||| ||||||||||||||||||||||| | Sbjct 22202 TCCAACGCTCGGTGAATTCTGCTCCACGATGATCGGAAGAGCCGACATCGAAGGATCGAT 22143 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||| |||||||||||||||||| || ||||||||||||||||||| ||||||||| ||| Sbjct 22142 AAGGGACGTCGCTATGAACGCTTTGCCGCCACAAGCCAGTTATCCCCGTGGTAACTCTTC 22083 Query 226 TGGCACCTC 234 || |||||| Sbjct 22082 TGACACCTC 22074 >seq813 Length=266272 Score = 181 bits (200), Expect = 2e-43 Identities = 122/137 (89%), Gaps = 7/137 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 131838 TCATCACTAGGGTAAAACTAATCTGTCTCATGATGGTCTAAACCCAGCTCACGTTCCCTA 131897 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||| || ||||||||| ||||||||||||||||| Sbjct 131898 TTAGTGGATGAACAATCCAACACT-------TTCTGCTTCACAATGATAGGAAGAGCCGA 131950 Query 151 CATCGAAGGATCAAAAA 167 ||||||||||||||||| Sbjct 131951 CATCGAAGGATCAAAAA 131967 >seq5107 Length=18812 Score = 159 bits (176), Expect = 6e-37 Identities = 121/143 (85%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 49 TAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 |||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||| Sbjct 9451 TAACCTGTCTCACGACGGTCTAATCCCAGCACACGTTCCCTATTAGTGGGTCAACAATCC 9392 Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 | |||| |||||| ||||| ||| ||||||||||||||||||||||||||| || Sbjct 9391 ACCGCTCTGTGAATTCCGCTTCACAGTGACAGGAAGAGCCGACATCGAAGGATCAAATAG 9332 Query 169 CAACGTCGCTATGAACGCTTGGC 191 ||| || |||||||||| || Sbjct 9331 AGACGCCGTAATGAACGCTTTGC 9309 >seq5673 Length=2251 Score = 156 bits (172), Expect = 7e-36 Identities = 141/178 (79%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| ||| |||||||| |||||||||| | || | ||||||||||| Sbjct 616 TCATCAGTAGG-------TAAACTGTCTCACGACGGTCTAATCACATCACACGTTCCCTA 668 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||| |||||||||||| |||||||||||| ||| ||||||||| || Sbjct 669 TTAGTGGGTGAGCAATCCAACGCTCGGTGAATTCTGCTTCACAGTGACAGGAAGAGCTGA 728 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||||| ||||||| || || | || |||| ||||| |||| ||||||||||| Sbjct 729 CATCGAATGATCAAATAGTGACACGGTGATAAACGTTTGGCCGCCAGAAGCCAGTTAT 786 >seq641 Length=364102 Score = 104 bits (114), Expect = 4e-20 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||| Sbjct 356306 GCTATGAACGCTTGGCCGCTACAAGCCAGTTATCCTTGTGGTAACTTTTCTGACACCTCC 356365 Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | || ||| | | | | |||||||| | ||| | |||||| ||| |||||||| Sbjct 356366 TG-CTTAAAAACCCAAAGTCAGAAGGATCGTGAAGCCCCGCTTTCACGGTCTGTATTCA 356423 Score = 80.6 bits (88), Expect = 5e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 |||||||||| ||||||||||||||||||| ||| ||| ||||||||||| |||||| Sbjct 356243 TCATCAGTAGAGTAAAACTAACCTGTCTCACGACAGTCCAAACCCAGCTCGCGTTCC 356299 >seq1759 Length=162484 Score = 102 bits (112), Expect = 1e-19 Identities = 78/94 (83%), Gaps = 9/94 (10%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| ||||| |||| ||||||||||||| ||| Sbjct 112240 TCATCAGTAGGGTAAAACTAACCAGTCTCCTGAC---------CCAGCTCACGTTCTCTA 112290 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||||||||||||||||||| ||| |||||| Sbjct 112291 TTAGTGGGTGAACAATCCAACACTTGGTGAATTC 112324 >seq287 Length=613563 Score = 89.7 bits (98), Expect = 9e-16 Identities = 84/106 (79%), Gaps = 11/106 (10%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 ||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||| Sbjct 412768 ACTAACCTGTCTCATGATGGTCTG------GCTCACGTTCCCTGTTAGTGGG-GAACAAT 412716 Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 || ||| || |||||||||||| ||||| |||||||||| Sbjct 412715 CCGACGTTTGGTGAATTCTGCTTCCTAATGAT----AGAGCCGACA 412674 >seq1279 Length=269146 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/123 (75%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 || |||||| || |||||||| |||||||| |||||||||||||| |||| |||| |||| Sbjct 20471 GTTGCTATGGACACTTGGCTGTCACAAGCCGGTTATCCCTGTGGTGACTTCTCTGACACC 20412 Query 233 TCTAGCCTCAAATTTC-GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 || || | ||| | | | | ||||| | ||| | | |||||| ||| ||||| Sbjct 20411 TCCTGCTTAAAAGCCCAAAAAGTCCGAAGGACAGCGAGGTCCCGCTTTCACGGTCTGTAT 20352 Query 292 TCA 294 ||| Sbjct 20351 TCA 20349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854310381984