Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2123 437 3e-120 seq34 154 4e-35 seq5747 134 4e-29 seq794 134 4e-29 seq3920 109 2e-21 seq1573 95.1 4e-17 seq5347 78.8 3e-12 >seq2123 Length=103858 Score = 437 bits (484), Expect = 3e-120 Identities = 413/519 (80%), Gaps = 21/519 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC-AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| | | ||||||| ||||||| ||||| | ||||||||| Sbjct 14803 GTACTCATTACAATTACAGGGCGGTAAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 14744 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| | | || |||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 14743 TCCCCGAGKCKKGAGTGGGKAATTTGCGCGCCTGCTGCCTTYCTTGGATGTGGTAGCCGT 14684 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| || |||| || Sbjct 14683 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGACACCACTGT 14624 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||| ||||||| | ||| |||||| | |||||| | Sbjct 14623 AGGCACAGAAAGTACCATCGAAAGTTGGTAGGGCACACATTCGAATGAGACGTCGCCGCC 14564 Query 240 TCAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC--- 294 | ||| | |||||| | | | ||||| || ||||||||| | || | || | Sbjct 14563 ACGAGGGCCAGCGATTGGCTTGAGGTTATCTAGAGTCACCAAGGYGGCCGG--GGCCCCC 14506 Query 295 --GTTGGTTTTTTA-TCTAATAAATACAC---CCCTTCCGAAGTC-GGGGTTTTTAGCAT 347 | ||| |||| | ||| |||||| ||| |||| || ||| | | | || |||| Sbjct 14505 CGGATGGGTTTTAAGTCTGATAAATGCACGCACCCT--GGAGGTCAGCGCTCGTTGGCAT 14448 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGA 405 ||||||||||||||||| |||| |||||||| ||| || | | | |||||| ||| | Sbjct 14447 GTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGA-GAGCGATCAAAGGAACCA 14389 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||||||||||||||||||||||||||||||| | | | ||||||||| ||| Sbjct 14388 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTTGC 14329 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| |||||||||| Sbjct 14328 ATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 14291 >seq34 Length=1316869 Score = 154 bits (170), Expect = 4e-35 Identities = 108/123 (88%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||| |||||||||||| | || | |||||| ||||||| ||||| | |||||| | Sbjct 1157442 GTACTTATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCRTCACTAMC 1157383 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157382 TCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1157323 Query 120 TTC 122 ||| Sbjct 1157322 TTC 1157320 >seq5747 Length=8927 Score = 134 bits (148), Expect = 4e-29 Identities = 99/114 (87%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 392 TATCAAATA-AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 |||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| | | | Sbjct 8049 TATCRTATATAACCATAACTGGTTTAATGAGCCATTCGCAGCTTCACTGTACCGGTYGTG 7990 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 7989 TGTACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 7937 >seq794 Length=403474 Score = 134 bits (148), Expect = 4e-29 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||||||| | | | ||||||||| || Sbjct 38409 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAMYGGCYGTGTGTACTTAGACTTG 38350 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| |||||||||| Sbjct 38349 CATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 38311 >seq3920 Length=26953 Score = 109 bits (120), Expect = 2e-21 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||| ||| ||||||||| ||||||||||||| | | | ||||||||| ||||||| Sbjct 1606 TGATCTAACGAGCCATTCACAGTTTCACTGTACCGGCCGTGTSTACTTAGACTTGCATGG 1547 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| |||||||||| Sbjct 1546 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1513 >seq1573 Length=160045 Score = 95.1 bits (104), Expect = 4e-17 Identities = 180/264 (68%), Gaps = 20/264 (8%) Strand=Plus/Plus Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 ||||| |||||| |||||||||||||||| | ||||| |||| | | ||||||| Sbjct 138081 GAATCCAACCCTGATTCCCCGTTACCCGTGGTCACCATAGTAGACACAGAAAGTACCATC 138140 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT 258 ||| |||||||||||||| ||| |||||| | |||||| | | ||| | ||||| | Sbjct 138141 GAAGGTTGATAGGGCAGACATTGGAATGAGACGTCGCCGCCACGAGGGCCAGCGATCGGC 138200 Query 259 T--AAGTTATTATGAATCACCAA---------GGAGCCCCGAAGGG-------CGTTGGT 300 | | || || || ||||||| || ||||| |||| ||| ||| Sbjct 138201 TCSAGGTKATCTAGAGTCACCAAAGCGGCCGGGGCGCCCCAGAGGGAACCCCACGTGGGT 138260 Query 301 TTTTTATCTAATAAATACAC-CCCTTCCGAAGTC-GGGGTTTTTAGCATGTATTAGCTCT 358 | | ||| ||| || ||| | | | | ||| | | | || || ||| |||||||| Sbjct 138261 TCTGGGTCTGATACATGCACGCACCCCGGCGGTCAGCGCTCGTTGGCTTGTGTTAGCTCT 138320 Query 359 AGAATTACCACGGTTATCCATGTA 382 |||| | ||| |||||||| ||| Sbjct 138321 AGAACTGACACAGTTATCCAAGTA 138344 >seq5347 Length=9519 Score = 78.8 bits (86), Expect = 3e-12 Identities = 68/82 (83%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAA 398 || ||||||||||||||||||||| |||| |||||||| ||| || | | | |||||| Sbjct 9499 TTGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGA-GAGCGATCAAA 9441 Query 399 TAAACGATAACTGATTTAATGA 420 ||| |||||||||||||||| Sbjct 9440 GGAACCATAACTGATTTAATGA 9419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510241574144