Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3303 181 8e-41 seq1 105 5e-18 >seq3303 Length=47767 Score = 181 bits (200), Expect = 8e-41 Identities = 511/770 (66%), Gaps = 39/770 (5%) Strand=Plus/Plus Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT 65770 ||||| | ||| || ||||| || |||| |||||| || | ||| || | Sbjct 41580 CAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGA 41639 Query 65771 GCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACT 65830 ||||| | ||| ||| |||| || ||| |||| || | || |||| |||||| || Sbjct 41640 GCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACG 41699 Query 65831 CCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAA 65890 ||||| || || || | || ||| ||||| | ||| || || || || ||||| Sbjct 41700 CCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAG 41759 Query 65891 TTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATG---CAC-GATACGTCGCA 65945 || || ||||| | |||||||| | || | | || | ||| ||| | || Sbjct 41760 TTAATTTCGATGACCTTGTTCAAATT-CTTGACGATTACTTTGGTCACAGATGC----CA 41814 Query 65946 ATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAA 66005 || || || |||||| | || || || ||| || ||| ||| | Sbjct 41815 GTTTTTTAAAGTCAAAA------GTCCGCTCCGGGGTGACGTACATG------TTG---A 41859 Query 66006 GGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTT 66065 | |||| || || || || || || |||| ||| || | ||| ||||| | ||||| Sbjct 41860 GCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTT 41919 Query 66066 CGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGC 66125 | ||||| || || ||| | |||||||||| ||||||||| || ||||| | |||| Sbjct 41920 CTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 41979 Query 66126 ATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGT 66185 | || || ||||||| |||||| || ||||| || || |||||||| || | ||||| Sbjct 41980 AGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGT 42039 Query 66186 GCCAAAGAGCGC-GTGCCTTCACCGTACGTACC-GCCCTACCTTTGCGT-TCGTA--ATG 66240 |||| | | || | ||||||||| ||| | | || || ||| | || || | | Sbjct 42040 GCCACA-ACTGCTGAGCCTTCACC--ACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGG 42096 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 | |||||| | |||||| || ||||| ||| ||| | ||| |||| || || Sbjct 42097 T--GTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCTGGGCACTCGTTGGG 42154 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATC 66358 ||||||||| ||||| || | | || ||| || | ||| || || || || ||| Sbjct 42155 ACACATCAGAGACCAGTCCTCGT--TGCTCTCCACTCTCTTCATGAACAGGTCGGGRATC 42212 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || ||| ||||||| || || | |||| |||||||| | ||| || || | Sbjct 42213 CACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGC 42272 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 || ||||| ||||| | |||||| ||||| || |||||||| |||||||| Sbjct 42273 TCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAA 42322 >seq1 Length=4870262 Score = 105 bits (116), Expect = 5e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| |||||| || Sbjct 4202896 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 4202955 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || |||||||| || || Sbjct 4202956 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGC 4203015 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC 66225 || || |||||||||| ||| | | ||||||||| ||| ||||| ||| Sbjct 4203016 GATTCGATGATGGCGTACCACACCTGCTGGGCCTTCACCACACGCTTCGCCCGACC 4203071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397517177018960