Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq110713 113 2e-22 seq161770 100 1e-18 seq130687 100 1e-18 seq4144 98.7 4e-18 seq144352 82.4 3e-13 seq62219 82.4 3e-13 seq48995 80.6 1e-12 seq160147 75.2 5e-11 seq150170 75.2 5e-11 seq92248 75.2 5e-11 seq43707 75.2 5e-11 >seq110713 Length=2119 Score = 113 bits (124), Expect = 2e-22 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||| |||||||||||| |||| |||| || |||||||||||||||| Sbjct 1311 GGACCCAAAAGATGATGAACTATGCCTCGGCAGGGCGAAGTCAAAGGAAACTCTGGTGGA 1370 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||| || |||||| ||| ||||||||||| || || | |||||||||| Sbjct 1371 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCTTCCGACCTGGGTATAGG 1420 >seq161770 Length=4038 Score = 100 bits (110), Expect = 1e-18 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| ||||||||||| |||||| | || | | |||||| | | ||||| |||||||| Sbjct 1835 AGTCGGGTTGTTTGGGATTGCAGCCCAAAGCGAGTGGTAAACTCCATCTAAGGCTAAATA 1894 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| ||||| |||||| ||||||| | | ||||| ||||||| |||| | | Sbjct 1895 CCGGCAAGAGATCGATAGTTGACAAGTACCTTTAGGGAAAGCTGAAAAGAACTT--AAGA 1952 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| || || ||||||| ||| | ||| || || Sbjct 1953 GAGAGTTCAAGAGGGCGTGAAACCGTTTAGAGGTAAACG 1991 >seq130687 Length=3954 Score = 100 bits (110), Expect = 1e-18 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||| ||||||| Sbjct 194 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTGGGGCTAAAT 135 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG-AAAAGCACTTTGGA 158 | ||| ||||||||||| ||||||| | | ||||| || ||||| |||||| | Sbjct 134 ACCGGCACGAGACCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAAGAACTTTGAA 75 Query 159 AAGAGAGTTAAAAAGCACGTGA 180 |||||||| || || ||||| Sbjct 74 GAGAGAGTTCAAGAGGGCGTGA 53 >seq4144 Length=12884 Score = 98.7 bits (108), Expect = 4e-18 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || || |||||| | | ||||| | ||||| Sbjct 3735 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGATAAAT 3676 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||||| |||| || | ||||| ||||||| ||| |||| Sbjct 3675 ATCAGCACAAGACCGATAGTCGACAATTACCTGAAGGGAAAGTTGAAAAGAACTCTGGAG 3616 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| |||| ||| || Sbjct 3615 AGAGAGTTCAAGAGGGCGTGAAACCTTTGAGAGGTAA 3579 >seq144352 Length=5910 Score = 82.4 bits (90), Expect = 3e-13 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | | ||| |||||| | | ||||| ||||||| Sbjct 5643 GAGTCGGGTTGTTTGGGAATGCAGCCCAAGGCGGGCGGTAAACTCCATCTAAGGCTAAAT 5584 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 | ||| ||||||||||| ||| ||| | | ||||| ||||||| Sbjct 5583 ACCGGCATGAGACCGATAGACGACATGTACCTTAAGGGAAAGTTGAAAAG 5534 >seq62219 Length=13881 Score = 82.4 bits (90), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG---T 461 || ||||||||| |||||||||||||||||||||| | |||||||| ||||| Sbjct 11680 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTGCATGCGAGTCAGAGGGTGCAAG 11621 Query 462 CAAACCCGTG-CGCGTAATGAAAGTGAACG--GAGGTGGGAACCC 503 |||| || || ||| ||||||||||| | ||||||||||||| Sbjct 11620 CAAAACCCTGTTGCGCAATGAAAGTGAGGGTTGAGGTGGGAACCC 11576 >seq48995 Length=9195 Score = 80.6 bits (88), Expect = 1e-12 Identities = 88/116 (76%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 3535 GAGTCGGGTTGTTTGGGAATGCAGCCCGAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 3476 Query 100 ATTGGCCAGAGACCGATAGCG--CACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 | ||| | |||||| || | ||||||| | | ||||| ||||||| ||| Sbjct 3475 ACCGGCACGGGACCGAGAGAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACT 3420 >seq160147 Length=1631 Score = 75.2 bits (82), Expect = 5e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||| Sbjct 231 CCCGTCTTGAAACACGGACCAAGGAGTCTAACACACGTGCGAGTCAAAGGGTGCAAAACC 172 Query 468 CGTGCGCGTAATGAAAGTGAA 488 | ||| |||||||||||| Sbjct 171 CCCAGGCGCAATGAAAGTGAA 151 >seq150170 Length=459 Score = 75.2 bits (82), Expect = 5e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | | ||| |||||| | | ||||| ||||||| Sbjct 81 GAGTCGGGTTGTTTGGGAATGCAGCCCAGAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 22 Query 100 ATTGGCCAGAGACCGATAG 118 | ||| ||||||||||| Sbjct 21 ACCGGCACGAGACCGATAG 3 >seq92248 Length=5489 Score = 75.2 bits (82), Expect = 5e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102 ||| |||||||||||||||||| | || || |||||| | | ||||| |||||||| Sbjct 3623 TCGGGTTGTTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATCTAAGGCTAAATACC 3564 Query 103 GGCCAGAGACCGATAGCGCACAAGTA 128 ||| ||||||||||| ||||||| Sbjct 3563 GGCATGAGACCGATAGTCGACAAGTA 3538 >seq43707 Length=5432 Score = 75.2 bits (82), Expect = 5e-11 Identities = 96/134 (72%), Gaps = 10/134 (7%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||| || |||||||||||||||||| | || ||| ||| || | | ||||| |||| Sbjct 4533 GAGACGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTTAACTCCATCTAAGGCTAC-- 4590 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 4591 --------GAGACCGATAGTCAACAAGTACCTTAAGGGAAAGCTGAAAAGAACTTTGAAG 4642 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 4643 AGAGAGTTCAAGAG 4656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076429690400