Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq148326 150 5e-34 seq5748 109 2e-21 seq58235 93.3 1e-16 seq78256 91.5 4e-16 seq6881 78.8 3e-12 seq161527 77.0 1e-11 >seq148326 Length=15018 Score = 150 bits (166), Expect = 5e-34 Identities = 134/167 (80%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176 |||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 15018 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGACACCAC 14959 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 ||||||| | ||||||||||||||| ||||||| | ||| |||||| | ||||| Sbjct 14958 GGTAGGCACAGAAAGTACCATCGAAAGTTGGTAGGGCACACATTCGAATGAGACGTCGCC 14899 Query 237 GGCTCAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAAGG 281 | | | ||| | |||||| | | | ||||| || ||||||||| Sbjct 14898 GCCACGAGGGCCAGCGATTGGCTTGAGGTTATCTAGAGTCACCAAGG 14852 >seq5748 Length=9217 Score = 109 bits (120), Expect = 2e-21 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||| ||| ||||||||| ||||||||||||| | | | ||||||||| ||||||| Sbjct 7448 TGATCTAACGAGCCATTCACAGTTTCACTGTACCGGCCGTGTCTACTTAGACTTGCATGG 7507 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| |||||||||| Sbjct 7508 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 7541 >seq58235 Length=7727 Score = 93.3 bits (102), Expect = 1e-16 Identities = 180/264 (68%), Gaps = 20/264 (8%) Strand=Plus/Plus Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 ||||| |||||| |||||||||||||||| | ||||| |||| | | ||||||| Sbjct 6055 GAATCCAACCCTGATTCCCCGTTACCCGTGGTCACCATAGTAGACACAGAAAGTACCATC 6114 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT 258 ||| |||||||||||||| ||| |||||| | |||||| | | ||| | ||||| | Sbjct 6115 GAAGGTTGATAGGGCAGACATTGGAATGAGACGTCGCCGCCACGAGGGCCAGCGATCGGC 6174 Query 259 T--AAGTTATTATGAATCACCAA---------GGAGCCCCGAAGGG-------CGTTGGT 300 | | || || || ||||||| || ||||| |||| ||| ||| Sbjct 6175 TCCAGGTGATCTAGAGTCACCAAAGCGGCCGGGGCGCCCCAGAGGGAACCCCACGTGGGT 6234 Query 301 TTTTTATCTAATAAATACAC-CCCTTCCGAAGTC-GGGGTTTTTAGCATGTATTAGCTCT 358 | | ||| ||| || ||| | | | | ||| | | | || || ||| |||||||| Sbjct 6235 TCTGGGTCTGATACATGCACGCACCCCGGCGGTCAGCGCTCGTTGGCTTGTGTTAGCTCT 6294 Query 359 AGAATTACCACGGTTATCCATGTA 382 |||| | ||| |||||||| ||| Sbjct 6295 AGAACTGACACAGTTATCCAAGTA 6318 >seq78256 Length=11346 Score = 91.5 bits (100), Expect = 4e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 53 >seq6881 Length=9002 Score = 78.8 bits (86), Expect = 3e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 392 TATCAAATA-AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 ||||| ||| ||| ||||||| ||||||||||||||||||||||||||||| | | | Sbjct 3815 TATCATATATAACCATAACTGGTTTAATGAGCCATTCGCAGTTTCACTGTACCGGTCGTG 3874 Query 451 TATACTTAGACATGC 465 | ||||||||| ||| Sbjct 3875 TGTACTTAGACTTGC 3889 >seq161527 Length=3297 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC-AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| | | ||||||| ||||||| ||||| | ||||||||| Sbjct 79 GTACTCATTACAATTACAGGGCGGTAAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 20 Query 60 TCCCCGTGTCGGGATTGGG 78 |||||| ||||||| |||| Sbjct 19 TCCCCGAGTCGGGAGTGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507885969408