Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq51664 235 4e-57 seq120612 105 5e-18 >seq51664 Length=13532 Score = 235 bits (260), Expect = 4e-57 Identities = 551/816 (68%), Gaps = 39/816 (5%) Strand=Plus/Plus Query 65771 GCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACT 65830 ||||| ||||| ||| |||| || ||| |||| || | || |||| |||||| || Sbjct 11178 GCCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACG 11237 Query 65831 CCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAA 65890 ||||| || || || | || ||| ||||| | ||| || || || || ||||| Sbjct 11238 CCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAG 11297 Query 65891 TTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATG---CAC-GATACGTCGCA 65945 || || ||||| || |||||||| | || | | || | ||| ||| | || Sbjct 11298 TTAATTTCGATGATCTTGTTCAAATT-CTTGACGATTACTTTGGTCACAGATGC----CA 11352 Query 65946 ATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAA 66005 || || || |||||| | || || || ||| || ||| ||| | Sbjct 11353 GTTTTTTAAAGTCAAAA------GTCCGCTCCGGGGTGACGTACATG------TTG---A 11397 Query 66006 GGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTT 66065 | |||| || || || || || || |||| ||| || | ||| ||||||| |||| Sbjct 11398 GCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTT 11457 Query 66066 CGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGC 66125 | |||||||| || ||| | |||||||||| ||||||||| || ||||| | |||| Sbjct 11458 CTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 11517 Query 66126 ATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGT 66185 | || || ||||||| |||||| || ||||| || || |||||||| || | ||||| Sbjct 11518 AGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGT 11577 Query 66186 GCCAAAGAGCGC-GTGCCTTCACCGTACGTACC-GCCCTACCTTTGCGT-TCGTA--ATG 66240 |||| | | || | ||||||||| ||| | | || || ||| | || || | | Sbjct 11578 GCCACA-ACTGCTGAGCCTTCACC--ACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGG 11634 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 | |||||| | |||||| || ||||| ||| || | ||| |||| || || Sbjct 11635 T--GTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGG 11692 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATC 66358 ||||||||| ||||| || | | || ||| ||| ||| || || || || ||| Sbjct 11693 ACACATCAGAGACCAGTCCTCGT--TGCTCTCCACTCTCTTCATGAACAGGTCGGGGATC 11750 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || ||| ||||||| || || | |||| |||||||| | ||| || || | Sbjct 11751 CACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGC 11810 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || ||||| ||||| | |||||| ||||| || |||||||| |||||||| | || Sbjct 11811 TCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGT 11870 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 | ||| ||| || ||||||||||| || || |||||| | || | || ||| || Sbjct 11871 CTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGG 11930 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 |||| |||||| || ||||| ||||||||| ||||| Sbjct 11931 ACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATG 11966 >seq120612 Length=9325 Score = 105 bits (116), Expect = 5e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| |||||| || Sbjct 2706 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 2647 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || |||||||| || || Sbjct 2646 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGC 2587 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC 66225 || || |||||||||| ||| | | ||||||||| ||| ||||| ||| Sbjct 2586 GATTCGATGATGGCGTACCACACCTGCTGGGCCTTCACCACACGCTTCGCCCGACC 2531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396761499518720