Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10484 127 9e-27 seq589 122 4e-25 seq3039 118 4e-24 seq1195 113 2e-22 seq7906 111 7e-22 seq1209 111 7e-22 seq1358 104 1e-19 seq5039 100 1e-18 seq1724 100 1e-18 seq235 100 1e-18 seq4281 86.0 3e-14 seq1022 84.2 9e-14 seq4530 77.0 1e-11 seq10289 75.2 5e-11 seq887 75.2 5e-11 seq110 75.2 5e-11 >seq10484 Length=9380 Score = 127 bits (140), Expect = 9e-27 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| Sbjct 6650 GGACCCGAAAGATGGTGAACTATGTCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGA 6709 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | ||| || ||| | ||||||||| ||||| | ||||||||||||||| Sbjct 6710 GGCCTGTAGCAGTCCTGACATGCAAATCGGTCGTCCATCCTGGGTATAGGGGCGA 6764 >seq589 Length=216745 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 34005 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAAGTCCATCTAAGGCTAAAT 34064 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 34065 ACCGGCACCAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 34124 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 34125 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 34164 >seq3039 Length=76524 Score = 118 bits (130), Expect = 4e-24 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||| |||||||||||||| || ||| |||||| | | ||||| ||||||| Sbjct 33213 GAGTCGGGTTGTCTGGGAATGCAGCTCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 33272 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 33273 ACCRGSACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 33332 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| |||| ||| || || Sbjct 33333 AGAGAGTTCAAGAGGGCGTGAAACCRTTGAGAGGTAAACG 33372 >seq1195 Length=142881 Score = 113 bits (124), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || || |||||| | ||||| ||||||| Sbjct 47598 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCGATCTAAGGCTAAAT 47657 Query 100 ATTGGC-CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||| ||| | ||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 47658 ACCGGCACAG-GGCCGATAGTCGACAAGTACCCTAAGGGAAAGTTGAAAAGAACTTTGAA 47716 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||||| ||| || || Sbjct 47717 GAGAGAGTTCAAGAGGGCGTGAAATCGTTGAGAGGTAAACG 47757 >seq7906 Length=20999 Score = 111 bits (122), Expect = 7e-22 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||||||||| | | ||||| ||||||| Sbjct 11498 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGAGGTAAACTCCATCTAAGGCTAAAT 11557 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | |||||||||| ||||||| | | |||| ||| ||| |||||| | Sbjct 11558 ACCGTCACAAGACCGATAGTCGACAAGTACCTTAA--AAAAGTTGACAAGAACTTTGAAG 11615 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||||| ||| || || Sbjct 11616 AGAGAGTTCAAGAGGACGTGAAACCGTTGAGAGGTAAACG 11655 >seq1209 Length=138649 Score = 111 bits (122), Expect = 7e-22 Identities = 117/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||||||||||||||||| | || ||| |||||| | | ||||| |||||||| |||| Sbjct 41721 GTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCA 41662 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||| ||| ||| | | ||||| ||||||| ||||| ||| || ||| Sbjct 41661 TGAGACCGATAGTCGACATGTACCTTAAGGGAAAGTTGAAAAGAACTTT-GAAGGACAGT 41603 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | ||||| | ||||| ||||| ||| || || Sbjct 41602 TCAAAAGGTCATGAAACCGTTGAGAGGTAAACG 41570 >seq1358 Length=143914 Score = 104 bits (114), Expect = 1e-19 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| ||| ||||| | ||||| Sbjct 61667 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTTCATCTAAGGATAAAT 61726 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| |||| || | ||||| ||||||| ||| || | Sbjct 61727 ACCAGCACGAGACCGATAGTCGACAATTACCTGAAGGGAAAGTTGAAAAGAACTCTGAAG 61786 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| |||| ||| || Sbjct 61787 AGAGAGTTCAAGAGGGCGTGAAACCTTTGAGAGGTAA 61823 >seq5039 Length=38849 Score = 100 bits (110), Expect = 1e-18 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| ||||||||||| |||||| | || | | |||||| | | ||||| |||||||| Sbjct 2215 AGTCGGGTTGTTTGGGATTGCAGCCCAAAGCGAGTGGTAAACTCCATCTAAGGCTAAATA 2156 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| ||||||||||| ||||||| | | ||||| ||||||| |||| | | Sbjct 2155 CCGGCACGAGACCGATAGTCGACAAGTACCTTTAGGGAAAGCTGAAAAGAACTT--AAGA 2098 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| || || ||||||| ||| | ||| || || Sbjct 2097 GAGAGTTCAAGAGGGCGTGAAACCGTTTAGAGGTAAACG 2059 >seq1724 Length=117319 Score = 100 bits (110), Expect = 1e-18 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 |||||||||||||||||| | || ||| |||||| | ||||| |||||||| ||| Sbjct 28943 GTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCTATCTAAGGCTAAATACCGGCA 28884 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||||||||| ||||||| | | ||||| ||||||| |||||| | ||||||| Sbjct 28883 CGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGT 28824 Query 167 TAAAAAGCAC 176 | || | ||| Sbjct 28823 TTAAGACCAC 28814 >seq235 Length=326068 Score = 100 bits (110), Expect = 1e-18 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 286841 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCCGGTGGTAAACTCCATCTAAGGCTAAAT 286900 Query 100 ATTGGCCAGAGA--CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 | ||| |||| ||||||| | ||||| | | ||||| ||||||| |||||| Sbjct 286901 ACCGGCATGAGACCCCGATAGTCGAAAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGA 286960 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 | |||||||| | || ||||||| ||||| Sbjct 286961 AGAGAGAGTTCGAGAGGGCGTGAAACCGTTGA 286992 >seq4281 Length=56529 Score = 86.0 bits (94), Expect = 3e-14 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 || |||||| | | ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct 41687 GGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCGACAAGTACCTT 41746 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 | ||||| ||||||| ||| || | |||||||| || || ||||||| ||||| || Sbjct 41747 AAGGGAAAGTTGAAAAGAACTGTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAG 41806 Query 193 GGAAGCG 199 | || || Sbjct 41807 GTAAACG 41813 >seq1022 Length=145552 Score = 84.2 bits (92), Expect = 9e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 35606 GAGTCGGGTTGTTTGGGAATGCAGCCCGAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 35665 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 | ||| | |||||| || ||||||| | | ||||| ||||||| ||| Sbjct 35666 ACCGGCACGGGACCGAGAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACT 35719 >seq4530 Length=50951 Score = 77.0 bits (84), Expect = 1e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| ||| ||||||||||| ||||||| | | ||||| ||||||| || Sbjct 14170 GCTAAATACCGGCACGAGACCGATAGTYGACAAGTACCTTAAGGGAAAGTTGAAAAGAAC 14229 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| | |||||||| || || ||||||| ||||| ||| || || Sbjct 14230 TTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 14276 >seq10289 Length=7721 Score = 75.2 bits (82), Expect = 5e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 7050 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 7109 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | || |||||| |||| ||||||| Sbjct 7110 ACCGGTACGAGACCAATAGTCGACAAGTA 7138 >seq887 Length=164583 Score = 75.2 bits (82), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT--- 461 || ||||||||| |||||||||||||||||||||| | | ||||||| |||||| Sbjct 121941 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGTATGTGCGAGTTAGAGGGTGTAAG 122000 Query 462 CAAA--CCCGTGCGCGTAATGAAAGTGA 487 |||| |||||| | | ||||||||||| Sbjct 122001 CAAAACCCCGTG-GTGCAATGAAAGTGA 122027 >seq110 Length=412876 Score = 75.2 bits (82), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG---T 461 || ||||||||| |||||||||||||||||||||||| | |||||| ||||| Sbjct 81891 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATACACGCGAGTCAGAGGGTGCAAG 81950 Query 462 CAAA--CCCGTGCGCGTAATGAAAGTGA 487 |||| |||||| ||| ||||||||||| Sbjct 81951 CAAAACCCCGTG-GCGCAATGAAAGTGA 81977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079659545600