Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2 174 3e-41 seq1555 87.8 3e-15 >seq2 Length=1000547 Score = 174 bits (192), Expect = 3e-41 Identities = 194/256 (76%), Gaps = 16/256 (6%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 819662 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 819720 Query 76 AAACTTCCATTGGCTGGAAGCCAATAG----------TCCCTCTAAGAAGCCAGCCACCA 125 || || | |||||| | |||| | | ||||||||||||| | | | Sbjct 819721 AATCT-CGTGTGGCTGAACGCCACTGGACACCACTTGTCCCTCTAAGAAGTTGGACGACG 819779 Query 126 ACCATAGTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 ||| | | | || || |||||| | |||||||| | ||| ||||||||| Sbjct 819780 ACCGCACGGGGCCGCGCAACTAGTTAGCATGCCGTAGTCTCGTTTGATATTGGAATTAAC 819839 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||||||||||||| ||||| || || ||||||||||||| | | |||| ||||| Sbjct 819840 CAGACAAATCACTCCACCATCTAAGTACAGCAATGCACCACCACCTACA-AATCGAGAAA 819898 Query 243 GAGCTATCAATCTGTC 258 ||||||| |||||||| Sbjct 819899 GAGCTATTAATCTGTC 819914 >seq1555 Length=126223 Score = 87.8 bits (96), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 14/168 (8%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAAT 100 |||| |||||||||||||||||| ||||||| |||| || ||| |||||| | ||| Sbjct 18895 ACATTTAAGGGCATCACAGACCTRTTATTGC-TCAATCT--CATGTGGCTGAACGCC--- 18842 Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACCATA---GTCGATGGGGCTATTTAGCAGGTTAA 157 ||||||||||| | | |||||| | | | | ||| | |||| | | Sbjct 18841 ----CCTCTAAGAAGTCGGATGCCAACCGCACAGGGCCACAAAACTAGTCAGCATGCTTG 18786 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||||| ||||||||||||||||| || | |||||||| ||| Sbjct 18785 AGTCTCGTTCGCTATCGGAATTAACCAGATAATTTGCTCCACCATCTA 18738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796677484032