Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq190 298 9e-79 seq1553 282 7e-74 seq554 233 3e-59 seq10010 212 1e-52 seq3943 181 2e-43 seq2232 179 6e-43 seq1911 161 2e-37 seq1324 107 3e-21 seq4474 105 1e-20 seq1148 89.7 9e-16 seq7667 77.0 6e-12 >seq190 Length=320899 Score = 298 bits (330), Expect = 9e-79 Identities = 215/249 (86%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 57633 AACTAACCTGTCTCACGACGGTCTAARCCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 57574 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 |||||||||| |||||||||||| |||||||||||||||||| |||||||| | || Sbjct 57573 TCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACGTCGAAGGAACGAA 57514 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57513 AAGCGTCGTCGTTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 57454 Query 226 TGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGT 285 || || ||| || | ||| | | | | | |||||| ||||| |||||||||||| Sbjct 57453 TGACATCTCCTGCTTAAAACCCCAAAAGTCAGATGGATCGTGAGGCCCCACTTTCATGGT 57394 Query 286 TTGTATTCA 294 |||||||| Sbjct 57393 CTGTATTCA 57385 >seq1553 Length=124625 Score = 282 bits (312), Expect = 7e-74 Identities = 185/204 (91%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| | Sbjct 37366 TCATCAGTAGGGTAAAACTAAACTGTCTCACGACGGTCTAAACTTAGCTCACGTTCCCCA 37307 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||||||| ||||||||||||| ||| ||| ||||||||| Sbjct 37306 TTAGTGGTTGAACAATCCAACGCTTGGTGAATTCTGCTTCGCAATGGTAGAAAGAGCCGA 37247 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 37246 CATCTATGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 37187 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||| |||||| Sbjct 37186 CTGTGGTAACTTTTCTCACACCTC 37163 >seq554 Length=219342 Score = 233 bits (258), Expect = 3e-59 Identities = 149/162 (92%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 83 GTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 21724 GTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGA 21783 Query 143 AGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 21784 AGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCC 21843 Query 203 AGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 |||||||||| |||||||||||||| ||||||| || | ||| Sbjct 21844 AGTTATCCCTTTGGTAACTTTTCTGACACCTCTTGCTTAAAA 21885 >seq10010 Length=8959 Score = 212 bits (234), Expect = 1e-52 Identities = 161/189 (85%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||| |||| |||||| | ||||||| ||| ||||||| ||||||||||||| |||||| Sbjct 738 AACGAACCCGTCTCACGGCGGTCTACACC-AGCTCACCTTCCCTATTAGTGTATGAACAG 796 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||||||||| |||||||||| | ||||| ||||||||||||||||||||||| | Sbjct 797 TCCAACGCTCGGTGAATTCTGCTCCACGATGATCGGAAGAGCCGACATCGAAGGATCGAT 856 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||| |||||||||||||||||| || ||||||||||||||||||| ||||||||| ||| Sbjct 857 AAGGGACGTCGCTATGAACGCTTTGCCGCCACAAGCCAGTTATCCCCGTGGTAACTCTTC 916 Query 226 TGGCACCTC 234 || |||||| Sbjct 917 TGACACCTC 925 >seq3943 Length=54678 Score = 181 bits (200), Expect = 2e-43 Identities = 122/137 (89%), Gaps = 7/137 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 22416 TCATCACTAGGGTAAAACTAATCTGTCTCATGATGGTCTAAACCCAGCTCACGTTCCCTA 22357 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||| || ||||||||| ||||||||||||||||| Sbjct 22356 TTAGTGGATGAACAATCCAACACT-------TTCTGCTTCACAATGATAGGAAGAGCCGA 22304 Query 151 CATCGAAGGATCAAAAA 167 ||||||||||||||||| Sbjct 22303 CATCGAAGGATCAAAAA 22287 >seq2232 Length=112663 Score = 179 bits (198), Expect = 6e-43 Identities = 146/178 (82%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||||||||| ||||||| || |||||| ||||||||||| Sbjct 76945 TCATCAGTAGG-------TAACCTGTCTCACGACGGTCAAATCCCAGCACACGTTCCCTA 76997 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||| ||||||||||||||| |||||| |||| ||| |||||||||||| Sbjct 76998 TTAGTGGGTCAACAATCCAACGCTTGGTTAATTCTACTTCACAGTGACAGGAAGAGCCGA 77057 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||||||||||||| || || | ||| |||| ||||| |||||||||||||||| Sbjct 77058 CATCGAAGGATCAAATAGTGACACGGTTATAAACGTTTGGCCGCCACAAGCCAGTTAT 77115 >seq1911 Length=116328 Score = 161 bits (178), Expect = 2e-37 Identities = 122/145 (84%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || |||||||||| ||||||||| |||||||| Sbjct 44815 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGKGTAAAACTAMCCTGTCTC 44756 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | |||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 44755 ACRAYGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCCACGCTTGGTG 44696 Query 120 AATTCTGCTTCGGTATGATAGGAAG 144 ||||||||||| ||||||||||| Sbjct 44695 AATTCTGCTTCCCAATGATAGGAAG 44671 >seq1324 Length=152599 Score = 107 bits (118), Expect = 3e-21 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||| Sbjct 7803 GCTATGAACGCTTGGCCGCTACAAGCCAGTTATCCTTGTGGTAACTTTTCTGACACCTCC 7744 Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 7743 TGCTTAAAAAACAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 7685 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 |||||||||| ||||||||||||||||||| ||| ||| |||||||||| |||||| Sbjct 7866 TCATCAGTAGAGTAAAACTAACCTGTCTCACGACAGTCCAAACCCAGCTTGCGTTCC 7810 >seq4474 Length=45755 Score = 105 bits (116), Expect = 1e-20 Identities = 79/94 (84%), Gaps = 9/94 (10%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| ||||| |||| ||||||||||||||||| Sbjct 41918 TCATCAGTAGGGTAAAACTAACCAGTCTCCTGAC---------CCAGCTCACGTTCCCTA 41968 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||||||||||||||||||| ||| |||||| Sbjct 41969 TTAGTGGGTGAACAATCCAACACTTGGTGAATTC 42002 >seq1148 Length=142681 Score = 89.7 bits (98), Expect = 9e-16 Identities = 84/106 (79%), Gaps = 11/106 (10%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 ||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||| Sbjct 96738 ACTAACCTGTCTCATGATGGTCTG------GCTCACGTTCCCTGTTAGTGGG-GAACAAT 96790 Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 || ||| || |||||||||||| ||||| |||||||||| Sbjct 96791 CCGACGTTTGGTGAATTCTGCTTCCTAATGAT----AGAGCCGACA 96832 >seq7667 Length=28891 Score = 77.0 bits (84), Expect = 6e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 || |||||| || |||||||| |||||||| |||||||||||||| |||| |||| |||| Sbjct 6340 GTTGCTATGGACACTTGGCTGTCACAAGCCGGTTATCCCTGTGGTGACTTCTCTGACACC 6399 Query 233 TC 234 || Sbjct 6400 TC 6401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854264389632