Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2134 302 1e-79 seq13 289 9e-76 >seq2134 Length=105644 Score = 302 bits (334), Expect = 1e-79 Identities = 207/232 (89%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 202 ATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCA 260 ||||| ||||||||||||||| || ||||| | |||||||||||||||||||| | Sbjct 13053 ATAAGAGTAGTGGTATTTCACCGACGGCCGAAGC--CTCCCACTTATTCTACACCTAT-- 12998 Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 ||| |||||| | | |||||||||||||||||||||||||||||||||||||||||| Sbjct 12997 -GTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 12939 Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380 | ||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 12938 CTGCCMAGCCCGTTCCCTTGGCTGTGGTTTCRCTAGATAGTAGGTAGGGACAGTGGGAAT 12879 Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 12878 CTCGTTCATCCATTCATGCGCGTCTTTAATTAGATGACGAGGCATTTGGCTA 12827 >seq13 Length=750399 Score = 289 bits (320), Expect = 9e-76 Identities = 242/304 (80%), Gaps = 33/304 (11%) Strand=Plus/Minus Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 ||| |||||||||||||||||||||| | ||| |||||| | | |||||||||||||| Sbjct 135076 ACGCCTCCCACTTATTCTACACCTCTTATGTCTCTTCACATTGCCAGACTAGAGTCAAGC 135017 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 135016 TCAACAGGGTCTTCTTTCCCCGCTGTTTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 134957 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||| |||||||||||||||||||||| | ||||||||| ||||||||||||| Sbjct 134956 CTAGATAGCCAGTAGGGACAGTGGGAATCTCGTTCAACCATTCATGTGCGTCACTAATTA 134897 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||| ||||||||||||||| || |||| Sbjct 134896 GATGAAGAGGCATTTGGCTACTTT------------------------------TGGCGC 134867 Query 473 TTGGTTGAATTTCTTCACTTTGACAT---TCAGAGCACTGGGCAGAAATCACATTGCGTC 529 || |||||||||||||||||||||| || |||||| |||||||||||||| |||| Sbjct 134866 TTCATTGAATTTCTTCACTTTGACATCGCTCTGAGCACCAGGCAGAAATCACATCACGTC 134807 Query 530 AACA 533 |||| Sbjct 134806 AACA 134803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634940461056