Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1997 318 2e-84 seq5487 147 7e-33 seq4298 136 1e-29 seq5781 132 1e-28 seq2613 109 2e-21 seq2957 82.4 2e-13 >seq1997 Length=102294 Score = 318 bits (352), Expect = 2e-84 Identities = 311/395 (79%), Gaps = 17/395 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC-AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| | | ||||||| ||||||| ||||| | ||||||||| Sbjct 19497 GTACTCATTACAATTACAGGGCGGTAAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 19438 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 19437 TCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTTCTTGGATGTGGTAGCCGT 19378 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||| | | |||| ||| Sbjct 19377 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCRTGGWCACCAYGGT 19318 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||| ||||||| | ||| ||||| | |||||| | Sbjct 19317 AGGCACAGAAAGTACCATCGAAAGTTGGTAGGGCACACATTCAAATGAGACGTCGCCGCC 19258 Query 240 TCAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC--- 294 | ||| | |||||| | | | ||||| || ||||||||| | || | || | Sbjct 19257 ACGAGGGCCAGCGATTGGCTTGAGGTTATCTAGAGTCACCAAGGCGGCCGG--GGCCCCC 19200 Query 295 --GTTGGTTTTTTA-TCTAATAAATACAC---CCCTTCCGAAGTC-GGGGTTTTTAGCAT 347 | ||| |||| | ||| |||||| ||| |||| || ||| | | | || |||| Sbjct 19199 CGGATGGGTTTTAAGTCTGATAAATGCACGCACCCT--GGAGGTCAGCGCTCATTGGCAT 19142 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTA 382 ||||||||||||||||| |||| |||||||| ||| Sbjct 19141 GTATTAGCTCTAGAATTGCCACAGTTATCCAAGTA 19107 >seq5487 Length=38375 Score = 147 bits (162), Expect = 7e-33 Identities = 107/123 (87%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||| |||||||||||| | || | |||||| ||||||| ||||| | |||||| | Sbjct 25497 GTACTTATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACTAAC 25556 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25557 TCCCCGAGTCGGGCGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 25616 Query 120 TTC 122 ||| Sbjct 25617 TTC 25619 Score = 87.8 bits (96), Expect = 5e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27100 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 27147 >seq4298 Length=56267 Score = 136 bits (150), Expect = 1e-29 Identities = 100/114 (88%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 392 TATCAAATA-AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 |||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| | ||| Sbjct 1061 TATCGTATATAACCATAACTGGTTTAATGAGCCATTCGCAGCTTCACTGTACCGGTTGTG 1120 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1121 TGTACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1173 >seq5781 Length=41531 Score = 132 bits (146), Expect = 1e-28 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||||||| | | | ||||||||| || Sbjct 24688 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACTGGCCGTGTGTACTTAGACTTG 24747 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| |||||||||| Sbjct 24748 CATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 24786 >seq2613 Length=82574 Score = 109 bits (120), Expect = 2e-21 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||| ||| ||||||||| ||||||||||||| | | | ||||||||| ||||||| Sbjct 1271 TGATCTAACGAGCCATTCACAGTTTCACTGTACCGGCCGTGTSTACTTAGACTTGCATGG 1212 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| |||||||||| Sbjct 1211 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1178 >seq2957 Length=75884 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 59504 TACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 59454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510160269312