Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq410 104 2e-17 seq11498 89.7 4e-13 >seq410 Length=233677 Score = 104 bits (114), Expect = 2e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| |||||| || Sbjct 230145 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGYTGG 230086 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || || ||||| | |||||| || |||||||| || || Sbjct 230085 TTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGC 230026 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC 66225 || || |||||||||| ||| | | ||||||||| ||| ||||| ||| Sbjct 230025 GATTCGATGATGGCGTACCACACCTGCTGGGCCTTCACCACACGCTTCGCCCGACC 229970 >seq11498 Length=8624 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| |||||||| | |||||||| || ||||||| Sbjct 5687 TGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCGAGGTGTTTCTATGGTTTCCAGA 5628 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATG 61344 | ||||||||||| ||||||| ||| || Sbjct 5627 TCGCCATGGAGAACATCCACTCAGAGGTG 5599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397491094446080