Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq47266 98.7 2e-18 >seq47266 Length=11044 Score = 98.7 bits (108), Expect = 2e-18 Identities = 189/270 (70%), Gaps = 14/270 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| || |||| ||| || | | ||| | ||||||||||||||||| |||||| Sbjct 10046 ATGCTCTTAGTTGAGTGTCCCGCGGGGTCTGGAACATTTACTTTGAAAAAATTTGAGTGT 9987 Query 98 TCAAAGCAGGCCTTTGCTCG----AATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||||||||| ||||| ||||| ||| |||||||| ||||| ||| | || Sbjct 9986 TCAAAGCAGGCCC--GCTCGCCTCAATACTGCAGCTAGGAATAATGGAATATGAC-TACG 9930 Query 154 GTTCTATTTTGTTGGTTTC---TAGGACCGCCGTA-ATGATTAATAGGGATAGTCGGGGG 209 ||||||| |||| | ||| | || || ||||| || ||||| | |||||| Sbjct 9929 GTTCTATATTGTGGATTTTCTTTCTGAATTAGGTGCATGATAAAGAGGGACGGCCGGGGG 9870 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG-AAGACTAACTACTGCG 268 | ||||| | ||| ||||||||||| || ||| ||| || | || Sbjct 9869 CATTTGTATTGTGCCGCTAGAAGTGAAATTCTT-GACCCGTTGCAAGGTGGACGAACACG 9811 Query 269 AAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||| || ||||| |||||||||| ||| Sbjct 9810 AAAGCATTTGCCAAGAATGTTTTCATGAAT 9781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914575778688