Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2537 179 6e-43 seq48199 91.5 2e-16 >seq2537 Length=12521 Score = 179 bits (198), Expect = 6e-43 Identities = 195/256 (76%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 4081 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 4023 Query 76 AAACTTCCATTGGCTGGAAGCCAATAG----------TCCCTCTAAGAAGCCAGCCACCA 125 || || | |||||| | |||| | | ||||||||||||| | | | Sbjct 4022 AATCT-CGTGTGGCTGAACGCCACTGGACACCACTTGTCCCTCTAAGAAGTTGGACGACG 3964 Query 126 ACCATAGTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 ||| | | | || || |||||| | |||||||| | ||| ||||||||| Sbjct 3963 ACCGCACGGGGCCGCGCAACTAGTTAGCATGCCGTAGTCTCGTTTGATATTGGAATTAAC 3904 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||||||||||||| ||||| || |||||||||||||||| | | |||| ||||| Sbjct 3903 CAGACAAATCACTCCACCATCTAAGTACAGCCATGCACCACCACCTACA-AATCGAGAAA 3845 Query 243 GAGCTATCAATCTGTC 258 ||||||| |||||||| Sbjct 3844 GAGCTATTAATCTGTC 3829 >seq48199 Length=5194 Score = 91.5 bits (100), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 14/168 (8%) Strand=Plus/Plus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAAT 100 |||| |||||||||||||||||||||||||| |||| || ||| |||||| | ||| Sbjct 1892 ACATTTAAGGGCATCACAGACCTGTTATTGC-TCAATCT--CATGTGGCTGAACGCC--- 1945 Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACCATA---GTCGATGGGGCTATTTAGCAGGTTAA 157 ||||||||||| | | |||||| | | | | ||| | |||| | | Sbjct 1946 ----CCTCTAAGAAGTCGGATGCCAACCGCACAGGGCCACAAAACTAGTCAGCATGCTTG 2001 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||||| ||||||||||||||||| || | |||||||| ||| Sbjct 2002 AGTCTCGTTCGCTATCGGAATTAACCAGATAATTTGCTCCACCATCTA 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796273517886