Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq17046 315 1e-83 seq9279 289 5e-76 seq6009 289 5e-76 seq29703 286 6e-75 seq55382 206 5e-51 seq10839 183 5e-44 seq35346 181 2e-43 seq62462 116 6e-24 seq16982 107 3e-21 seq34253 105 1e-20 seq15148 91.5 3e-16 seq5169 89.7 9e-16 seq52113 78.8 2e-12 >seq17046 Length=55161 Score = 315 bits (348), Expect = 1e-83 Identities = 198/214 (93%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 20991 TCGTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 21050 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 21051 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 21110 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 21111 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 21170 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 || |||||||||||||| ||||||| || | ||| Sbjct 21171 CTTTGGTAACTTTTCTGACACCTCTTGCTTAAAA 21204 >seq9279 Length=74568 Score = 289 bits (320), Expect = 5e-76 Identities = 214/250 (86%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 25367 AAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTCACGTTCCCTATTAGTGGGTGAACA 25426 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| | |||||||||| |||||||||||||||||| |||||||| | | Sbjct 25427 ATCCAACGCTTGGTGGATTCTGCTTCACAATGATAGGAAGAGCCGACGTCGAAGGAACGA 25486 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 25487 AAAGCGCCGTCGTTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 25546 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| || ||| || | ||| | | | | | |||||| ||||| ||||||||||| Sbjct 25547 CTGACATCTCCTGCTTAAAACCCCAAAAGTCAGATGGATCGTGAGGCCCCACTTTCATGG 25606 Query 285 TTTGTATTCA 294 | |||||||| Sbjct 25607 TCTGTATTCA 25616 >seq6009 Length=37277 Score = 289 bits (320), Expect = 5e-76 Identities = 214/250 (86%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| | Sbjct 28356 TCATCAGTAGGGTAAAACTAAACTGTCTCACGACGGTCTAAACTTAGCTCACGTTCCCCA 28415 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||||||| ||||||||||||| ||| ||| ||||||||| Sbjct 28416 TTAGTGGTTGAACAATCCAACGCTTGGTGAATTCTGCTTCGCAATGGTAGAAAGAGCCGA 28475 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| | |||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 28476 CATCTATGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 28535 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 28536 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 28595 Query 271 CCACACTTTC 280 || | ||||| Sbjct 28596 CCCCGCTTTC 28605 >seq29703 Length=32700 Score = 286 bits (316), Expect = 6e-75 Identities = 178/191 (93%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 |||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||| Sbjct 30551 AAAAATAACCTGTCTCACGACGGTCTAATCCCAGCGCACGTTCCCTATTAGTGGGTGAAC 30610 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 30611 AATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCA 30670 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 30671 AAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTT 30730 Query 224 TCTGGCACCTC 234 |||| |||||| Sbjct 30731 TCTGACACCTC 30741 >seq55382 Length=11790 Score = 206 bits (228), Expect = 5e-51 Identities = 160/189 (85%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||| |||| |||||| | ||||||| ||| ||||||| ||||||||||||| |||||| Sbjct 1378 AACGAACCCGTCTCACGGCGGTCTACACC-AGCTCACCTTCCCTATTAGTGTATGAACAG 1436 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||||||||| |||||||||| | ||||| ||||||||||||||||||||||| | Sbjct 1437 TCCAACGCTCGGTGAATTCTGCTCCACGATGATCGGAAGAGCCGACATCGAAGGATCGAT 1496 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||| |||||||||||||||||| || |||||||| |||||||||| ||||||||| ||| Sbjct 1497 AAGGGACGTCGCTATGAACGCTTTGCCGCCACAAGGCAGTTATCCCCGTGGTAACTCTTC 1556 Query 226 TGGCACCTC 234 || |||||| Sbjct 1557 TGACACCTC 1565 >seq10839 Length=8101 Score = 183 bits (202), Expect = 5e-44 Identities = 147/178 (83%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||||||||| |||||||||| |||||| ||||||||||| Sbjct 644 TCATCAGTAGG-------TAACCTGTCTCACGACGGTCTAATCCCAGCACACGTTCCCTA 696 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||| |||| ||| |||||||||||| Sbjct 697 TTAGTGGGTGAACAATCCAACGCTTGGTTAATTCTACTTCACAGTGACAGGAAGAGCCGA 756 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||||||||||||| || || | || |||| ||||| |||||||||||||||| Sbjct 757 CATCGAAGGATCAAATAGTGACACGGTGATAAACGTTTGGCCGCCACAAGCCAGTTAT 814 >seq35346 Length=15000 Score = 181 bits (200), Expect = 2e-43 Identities = 122/137 (89%), Gaps = 7/137 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 2989 TCATCACTAGGGTAAAACTAATCTGTCTCATGATGGTCTAAACCCAGCTCACGTTCCCTA 3048 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||||| || ||||||||| ||||||||||||||||| Sbjct 3049 TTAGTGGATGAACAATCCAACACT-------TTCTGCTTCACAATGATAGGAAGAGCCGA 3101 Query 151 CATCGAAGGATCAAAAA 167 ||||||||||||||||| Sbjct 3102 CATCGAAGGATCAAAAA 3118 >seq62462 Length=2556 Score = 116 bits (128), Expect = 6e-24 Identities = 75/82 (91%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 2556 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCCACGCTTGGTGAAT 2497 Query 123 TCTGCTTCGGTATGATAGGAAG 144 |||||||| ||||||||||| Sbjct 2496 TCTGCTTCCCAATGATAGGAAG 2475 >seq16982 Length=15858 Score = 107 bits (118), Expect = 3e-21 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 176 GCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||||| || ||||||||||||||| |||||||||||||||| |||||| Sbjct 8956 GCTATGAACGCTTGGCCGCTACAAGCCAGTTATCCTTGTGGTAACTTTTCTGACACCTCC 8897 Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 8896 TGCTTAAAAAACAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 8838 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 |||||||||| ||||||||||||||||||| ||| ||| |||||||||| ||||| Sbjct 9019 TCATCAGTAGAGTAAAACTAACCTGTCTCACGACAGTCCAAACCCAGCTTGCGTTC 8964 >seq34253 Length=20526 Score = 105 bits (116), Expect = 1e-20 Identities = 79/94 (84%), Gaps = 9/94 (10%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| ||||| |||| ||||||||||||||||| Sbjct 12639 TCATCAGTAGGGTAAAACTAACCAGTCTCCTGAC---------CCAGCTCACGTTCCCTA 12589 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||||||||||||||||||| ||| |||||| Sbjct 12588 TTAGTGGGTGAACAATCCAACACTTGGTGAATTC 12555 >seq15148 Length=31268 Score = 91.5 bits (100), Expect = 3e-16 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 21778 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 21837 Query 60 ATGACGGTCTAAACCCAGCTCACGT 84 | |||||||||||||||||||| || Sbjct 21838 ACGACGGTCTAAACCCAGCTCAAGT 21862 >seq5169 Length=11553 Score = 89.7 bits (98), Expect = 9e-16 Identities = 84/106 (79%), Gaps = 11/106 (10%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 ||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||| Sbjct 1506 ACTAACCTGTCTCATGATGGTCTG------GCTCACGTTCCCTGTTAGTGGG-GAACAAT 1454 Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 || ||| || |||||||||||| ||||| |||||||||| Sbjct 1453 CCGACGTTTGGTGAATTCTGCTTCCTAATGAT----AGAGCCGACA 1412 >seq52113 Length=5615 Score = 78.8 bits (86), Expect = 2e-12 Identities = 92/123 (75%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 || |||||| || |||||||| |||||||| |||||||||||||| |||| |||| |||| Sbjct 2105 GTTGCTATGGACACTTGGCTGTCACAAGCCGGTTATCCCTGTGGTGACTTCTCTGACACC 2046 Query 233 TCTAGCCTCAAATTTC-GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 || || | ||| | | | || ||||| | ||| | | |||||| ||| |||| Sbjct 2045 TCCTGCTTAAAAGCCCAAAAAGTCTGAAGGACAGCGAGGTCCCGCTTTCACGGTCCGTAT 1986 Query 292 TCA 294 ||| Sbjct 1985 TCA 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853817247936