Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq20774 333 9e-89 seq1767 280 5e-73 >seq20774 Length=3117 Score = 333 bits (368), Expect = 9e-89 Identities = 231/259 (89%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 |||| ||| | ||||| ||||||| ||||| ||||||||||||||| || ||||| Sbjct 1210 CCGCCTCACCGGGTAAGTGAAAAAACAATAAGAGTAGTGGTATTTCACCGACGGCCGAAG 1269 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | |||||||||||||||||||| | ||| |||||| | | ||||||||||||||| Sbjct 1270 C--CTCCCACTTATTCTACACCTAT---GTCTCTTCACAGTGCCAGACTAGAGTCAAGCT 1324 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1325 CAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 1384 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1385 TAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAG 1444 Query 414 ATGACGAGGCATTTGGCTA 432 ||||||||||||||||||| Sbjct 1445 ATGACGAGGCATTTGGCTA 1463 >seq1767 Length=106473 Score = 280 bits (310), Expect = 5e-73 Identities = 240/304 (79%), Gaps = 33/304 (11%) Strand=Plus/Minus Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 ||| |||||||||||||||||||||| | ||| |||||| | | |||||||||||||| Sbjct 27213 ACGCCTCCCACTTATTCTACACCTCTTATGTCTCTTCACATTGCCAGACTAGAGTCAAGC 27154 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 27153 TCAACAGGGTCTTCTTTCCCCGCTGTTTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 27094 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||| |||||||||||||||| ||||| | ||||||||| ||||||||||||| Sbjct 27093 CTAGATAGCCAGTAGGGACAGTGGGAATATCGTTCAACCATTCATGTGCGTCACTAATTA 27034 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||| ||||||||||||||| || |||| Sbjct 27033 GATGAAGAGGCATTTGGCTACTTT------------------------------TGGCGC 27004 Query 473 TTGGTTGAATTTCTTCACTTTGACAT---TCAGAGCACTGGGCAGAAATCACATTGCGTC 529 || ||||||||||||||||||||| || |||||| |||||||||||||| |||| Sbjct 27003 TTCACTGAATTTCTTCACTTTGACATCGCTCTGAGCACCAGGCAGAAATCACATCACGTC 26944 Query 530 AACA 533 |||| Sbjct 26943 AACA 26940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634084695488