Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11419 300 5e-79 seq20984 147 7e-33 seq36777 136 1e-29 seq25817 132 1e-28 seq24186 131 5e-28 seq17083 109 2e-21 seq59232 93.3 1e-16 seq1410 82.4 2e-13 >seq11419 Length=14738 Score = 300 bits (332), Expect = 5e-79 Identities = 237/282 (84%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 3256 GTACTCATTACAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 3315 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3316 TCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 3375 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct 3376 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGT 3435 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||||||||||||||| ||| |||||| | |||||| | Sbjct 3436 AGGCACAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGAGACGTCGCCGCC 3495 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA 279 | ||| | ||||| | | | ||||| || ||||||| Sbjct 3496 ACGAGGGCCAGCGATCGGCTCGAGGTTATCTAGAGTCACCAA 3537 Score = 197 bits (218), Expect = 4e-48 Identities = 248/332 (75%), Gaps = 19/332 (6%) Strand=Plus/Plus Query 169 GATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 228 || |||| ||||||| | |||||| |||||||| ||||||| | ||| |||||| Sbjct 3552 GACACCACGGTAGGCACAGAAAGTACCATTGAAAGTTGGTAGGGCACACATTCGAATGAG 3611 Query 229 CCATCGCCGGCTCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCC 286 | |||||| | | ||| | |||||| | | | ||||| || ||||||||| | || Sbjct 3612 ACGTCGCCGCCACGAGGGCCAGCGATTGGCTTGAGGTTATCTAGAGTCACCAAGGCGGCC 3671 Query 287 CGAAGGGC-----GTTGGTTTTTTA-TCTAATAAATACAC---CCCTTCCGAAGTCGGGG 337 | || | | ||| |||| | ||| |||||| ||| |||| || ||| | | Sbjct 3672 GG--GGCCCCCCGGATGGGTTTTAAGTCTGATAAATGCACGCACCCTG--GAGGTCAGCG 3727 Query 338 TTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTAT 394 | || ||||||||||||||||||||| |||| |||||||| ||| || || | || Sbjct 3728 CTCGTTGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAG-CGAT 3786 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | | || Sbjct 3787 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTA 3846 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||| |||||||||||||||||||||||| Sbjct 3847 CTTAGACTTGCATGGCTTAATCTTTGAGACAA 3878 >seq20984 Length=23131 Score = 147 bits (162), Expect = 7e-33 Identities = 107/123 (87%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||| |||||||||||| | || | |||||| ||||||| ||||| | |||||| | Sbjct 9369 GTACTTATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACTAAC 9310 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9309 TCCCCGAGTCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 9250 Query 120 TTC 122 ||| Sbjct 9249 TTC 9247 >seq36777 Length=17478 Score = 136 bits (150), Expect = 1e-29 Identities = 100/114 (88%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 392 TATCAAATA-AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 |||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| | ||| Sbjct 6585 TATCGTATATAACCATAACTGGTTTAATGAGCCATTCGCAGCTTCACTGTACCGGTTGTG 6644 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 6645 TGTACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 6697 >seq25817 Length=2417 Score = 132 bits (146), Expect = 1e-28 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||||||| | | | ||||||||| || Sbjct 2048 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACTGGCCGTGTGTACTTAGACTTG 2107 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| |||||||||| Sbjct 2108 CATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 2146 >seq24186 Length=12269 Score = 131 bits (144), Expect = 5e-28 Identities = 91/102 (89%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 ||||||||||||||||||||||||||||||||||||||| | | | |||||| || Sbjct 8599 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAAACT 8540 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 8539 TGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 8499 >seq17083 Length=5211 Score = 109 bits (120), Expect = 2e-21 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||| ||| ||||||||| ||||||||||||| | | | ||||||||| ||||||| Sbjct 3859 TGATCTAACGAGCCATTCACAGTTTCACTGTACCGGCCGTGTCTACTTAGACTTGCATGG 3800 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| |||||||||| Sbjct 3799 CTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 3766 >seq59232 Length=4393 Score = 93.3 bits (102), Expect = 1e-16 Identities = 180/264 (68%), Gaps = 20/264 (8%) Strand=Plus/Minus Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 ||||| |||||| |||||||||||||||| | ||||| |||| | | ||||||| Sbjct 1838 GAATCCAACCCTGATTCCCCGTTACCCGTGGTCACCATAGTAGACACAGAAAGTACCATC 1779 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT 258 ||| |||||||||||||| ||| |||||| | |||||| | | ||| | ||||| | Sbjct 1778 GAAGGTTGATAGGGCAGACATTGGAATGAGACGTCGCCGCCACGAGGGCCAGCGATCGGC 1719 Query 259 T--AAGTTATTATGAATCACCAA---------GGAGCCCCGAAGGG-------CGTTGGT 300 | | || || || ||||||| || ||||| |||| ||| ||| Sbjct 1718 TCCAGGTGATCTAGAGTCACCAAAGCGGCCGGGGCGCCCCAGAGGGAACCCCACGTGGGT 1659 Query 301 TTTTTATCTAATAAATACAC-CCCTTCCGAAGTC-GGGGTTTTTAGCATGTATTAGCTCT 358 | | ||| ||| || ||| | | | | ||| | | | || || ||| |||||||| Sbjct 1658 TCTGGGTCTGATACATGCACGCACCCCGGCGGTCAGCGCTCGTTGGCTTGTGTTAGCTCT 1599 Query 359 AGAATTACCACGGTTATCCATGTA 382 |||| | ||| |||||||| ||| Sbjct 1598 AGAACTGACACAGTTATCCAAGTA 1575 >seq1410 Length=52504 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 8285 TACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 8335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509369816576