Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq34972 232 5e-56 seq53140 123 2e-23 seq61326 118 8e-22 seq8304 105 5e-18 >seq34972 Length=31405 Score = 232 bits (256), Expect = 5e-56 Identities = 586/875 (67%), Gaps = 37/875 (4%) Strand=Plus/Minus Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT 65770 ||||| | ||| || ||||| || |||| |||||| || | ||| || | Sbjct 3058 CAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGA 2999 Query 65771 GCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACT 65830 ||||| | ||| ||| |||| || ||| |||| || | || |||| |||||| || Sbjct 2998 GCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACG 2939 Query 65831 CCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAA 65890 ||||| || || || | || ||| ||||| | ||| || || || || ||||| Sbjct 2938 CCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAG 2879 Query 65891 TTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATG---CACGATACGTCGCAA 65946 || || ||||| | |||||||| | || | | || | ||| | ||| | | Sbjct 2878 TTAATTTCGATGACCTTGTTCAAATT-CTTGACGATTACTTTGGTCAC-AGACGCC--AG 2823 Query 65947 TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAG 66006 || || || |||||| | || || || ||| || ||| ||| || Sbjct 2822 TTTTTTAAAGTCAAAA------GTCCGCTCCGGGGTGACGTACATG------TTG---AG 2778 Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 |||| || || || ||||| || |||| ||| || | ||| ||||||| |||||| Sbjct 2777 CGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAATTTC 2718 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||| || || ||| | |||||||||| ||||||||| || ||||| | ||||| Sbjct 2717 TGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCA 2658 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 || || ||||||| |||||| || ||||| || || |||||||| || | |||||| Sbjct 2657 GGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTG 2598 Query 66187 CCAAAGAGCGC-GTGCCTTCACCGTACGTACC-GCCCTACCTTTGCGT-TCGTA--ATGT 66241 ||| | | || | ||||||||| ||| | | || || ||| | || || | || Sbjct 2597 CCACA-ACTGCTGAGCCTTCACC--ACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGT 2541 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 |||||| | |||||| || ||||| || ||| | ||| |||| || ||| Sbjct 2540 --GTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCCAGCCCTGGGCACTCGTTGGGA 2483 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCC 66359 |||||||| ||||| || | | || ||| ||| ||| || || || || |||| Sbjct 2482 CACATCAGAGACCAGTCCTCGT--TGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCC 2425 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419 | ||| ||||||| || || | |||| |||||||| | ||| || || | | Sbjct 2424 ACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCT 2365 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479 | ||||| ||||| | |||||| ||||| || |||||||| ||||| || | || | Sbjct 2364 CCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTC 2305 Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 ||| ||| || ||||||||||| || || |||||| | || | || ||| || | Sbjct 2304 TCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGA 2245 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 ||| |||||| || ||||| ||||||||| ||||| Sbjct 2244 CGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATG 2210 >seq53140 Length=1855 Score = 123 bits (136), Expect = 2e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| |||||||| | |||||||| || ||||||| Sbjct 406 TGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCGAGGTGTTTCTATGGTTTCCAGA 347 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| |||||||| | || ||||||| | Sbjct 346 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTTCTCATCAACACCTACATCAAGA 287 Query 61376 AGC 61378 ||| Sbjct 286 AGC 284 >seq61326 Length=556 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| |||||||| | |||||||| || ||||||| Sbjct 296 TGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCGAGGTGTTTCTATGGTTTCCAGA 237 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||| | Sbjct 236 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTACATCAAGA 177 Query 61376 AGC 61378 ||| Sbjct 176 AGC 174 >seq8304 Length=64587 Score = 105 bits (116), Expect = 5e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| |||||| || Sbjct 6198 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 6257 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || |||||||| || || Sbjct 6258 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGC 6317 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC 66225 || || |||||||||| ||| | | ||||||||| ||| ||||| ||| Sbjct 6318 GATTCGATGATGGCGTACCACACCTGCTGGGCCTTCACCACACGCTTCGCCCGACC 6373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397237517375840