Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq19612 107 8e-21 seq33456 104 1e-19 seq274554 100 1e-18 seq56673 84.2 9e-14 seq32353 84.2 9e-14 seq170501 75.2 5e-11 seq110954 75.2 5e-11 seq17657 75.2 5e-11 >seq19612 Length=6048 Score = 107 bits (118), Expect = 8e-21 Identities = 93/115 (81%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||| ||| ||| || ||| ||||||||||||||||| Sbjct 306 GGACCCGAAAGATGGTGAACTATGTCTGGGCAGGACGAGGCCTGAGGAAACTCTGGTGGA 247 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | |||||| ||| ||||||||| ||| | ||||||||||||||| Sbjct 246 GGCCTGTAGCGGTCCTGAAATGCAAATCG---GTCCATCCTGGGTATAGGGGCGA 195 >seq33456 Length=10685 Score = 104 bits (114), Expect = 1e-19 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 51 TTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAG 110 |||||||||||||| | || |||||||||| | | ||||| |||||||| | | || Sbjct 8339 TTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCATCTAAGGCTAAATACCGTCACAAG 8280 Query 111 ACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA 170 |||||||| ||||||| | | |||| ||||||| |||||| | |||||||| || Sbjct 8279 ACCGATAGTCGACAAGTACCTTAA--AAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAA 8222 Query 171 AAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || |||||||| ||||| ||| || || Sbjct 8221 GAGGACGTGAAACCGTTGAGAGGTAAACG 8193 >seq274554 Length=4153 Score = 100 bits (110), Expect = 1e-18 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| ||||||||||| |||||| | || | | |||||| | | ||||| |||||||| Sbjct 2155 AGTCGGGTTGTTTGGGATTGCAGCCCAAAGCGAGTGGTAAACTCCATCTAAGGCTAAATA 2096 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| ||||| |||||| ||||||| | | ||||| ||||||| |||| | | Sbjct 2095 CCGGCAAGAGATCGATAGTCGACAAGTACCTTTAGGGAAAGCTGAAAAGAACTT--AAGA 2038 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| || || ||||||| ||| | ||| || || Sbjct 2037 GAGAGTTCAAGAGGGCGTGAAACCGTTTAGAGGTAAACG 1999 >seq56673 Length=1011 Score = 84.2 bits (92), Expect = 9e-14 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| || |||||||||| | || ||| |||||| | | ||||| |||| || Sbjct 394 GAGTCGGGTTGCTTTGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTATAT 453 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 | |||| ||||||||||| | ||||| | | ||||| ||||||| ||||| Sbjct 454 ACTGGCACGAGACCGATAGTCGAGAAGTACCTTAAGGGAAAGTTGAAAAGAACTTT 509 >seq32353 Length=316 Score = 84.2 bits (92), Expect = 9e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||| |||||||||||||| || ||| |||||| | | ||||| ||||||| Sbjct 238 GAGTCGGGTTGTCTGGGAATGCAGCTCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 297 Query 100 ATTGGCCAGAGACCGATAG 118 | |||| ||||||||||| Sbjct 298 ACTGGCACGAGACCGATAG 316 >seq170501 Length=551 Score = 75.2 bits (82), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 11/106 (10%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG---T 461 || ||||||||| |||||||||||||||||||||| | |||||| ||||| Sbjct 135 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC----ACGCGAGTCAGAGGGTGCAAG 80 Query 462 CAAA--CCCGTGCGCGTAATGAAAGTGA-ACGGAGGTGGGAACCCG 504 |||| |||||| ||| ||||||||||| | ||||||||| |||| Sbjct 79 CAAAACCCCGTG-GCGCAATGAAAGTGAGGCTGAGGTGGGATCCCG 35 >seq110954 Length=1093 Score = 75.2 bits (82), Expect = 5e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||||||||||||||||||| || |||||| ||| ||||||||||| || || | |||| Sbjct 124 AGGAAACTCTGGTGGAGGCCCGTAGCGGTCCTGACGTGCAAATCGGTCTTCCTACCTGGG 65 Query 673 TATAGGGGC 681 |||||| || Sbjct 64 TATAGGTGC 56 >seq17657 Length=8614 Score = 75.2 bits (82), Expect = 5e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | | ||| |||||| | | ||||| ||||||| Sbjct 5751 GAGTCGGGTTGTTTGGGAATGCAGCCCAAGGCGGGCGGTAAACTCCATCTAAGGCTAAAT 5692 Query 100 ATTGGCCAGAGACCGATAG 118 | ||| ||||||||||| Sbjct 5691 ACCGGCATGAGACCGATAG 5673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2074010473600