Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12-
20] 279,232 sequences; 648,011,071 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq19612 107 8e-21
seq33456 104 1e-19
seq274554 100 1e-18
seq56673 84.2 9e-14
seq32353 84.2 9e-14
seq170501 75.2 5e-11
seq110954 75.2 5e-11
seq17657 75.2 5e-11
>seq19612
Length=6048
Score = 107 bits (118), Expect = 8e-21
Identities = 93/115 (81%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||| ||| ||| || ||| |||||||||||||||||
Sbjct 306 GGACCCGAAAGATGGTGAACTATGTCTGGGCAGGACGAGGCCTGAGGAAACTCTGGTGGA 247
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| | |||||| ||| ||||||||| ||| | |||||||||||||||
Sbjct 246 GGCCTGTAGCGGTCCTGAAATGCAAATCG---GTCCATCCTGGGTATAGGGGCGA 195
>seq33456
Length=10685
Score = 104 bits (114), Expect = 1e-19
Identities = 113/149 (76%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 51 TTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAG 110
|||||||||||||| | || |||||||||| | | ||||| |||||||| | | ||
Sbjct 8339 TTTGGGAATGCAGCCCAAAGCGGGAGGTAAACTCCATCTAAGGCTAAATACCGTCACAAG 8280
Query 111 ACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA 170
|||||||| ||||||| | | |||| ||||||| |||||| | |||||||| ||
Sbjct 8279 ACCGATAGTCGACAAGTACCTTAA--AAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAA 8222
Query 171 AAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| |||||||| ||||| ||| || ||
Sbjct 8221 GAGGACGTGAAACCGTTGAGAGGTAAACG 8193
>seq274554
Length=4153
Score = 100 bits (110), Expect = 1e-18
Identities = 118/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100
||||| ||||||||||| |||||| | || | | |||||| | | ||||| ||||||||
Sbjct 2155 AGTCGGGTTGTTTGGGATTGCAGCCCAAAGCGAGTGGTAAACTCCATCTAAGGCTAAATA 2096
Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160
||| ||||| |||||| ||||||| | | ||||| ||||||| |||| | |
Sbjct 2095 CCGGCAAGAGATCGATAGTCGACAAGTACCTTTAGGGAAAGCTGAAAAGAACTT--AAGA 2038
Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||||| || || ||||||| ||| | ||| || ||
Sbjct 2037 GAGAGTTCAAGAGGGCGTGAAACCGTTTAGAGGTAAACG 1999
>seq56673
Length=1011
Score = 84.2 bits (92), Expect = 9e-14
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| || |||||||||| | || ||| |||||| | | ||||| |||| ||
Sbjct 394 GAGTCGGGTTGCTTTGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTATAT 453
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155
| |||| ||||||||||| | ||||| | | ||||| ||||||| |||||
Sbjct 454 ACTGGCACGAGACCGATAGTCGAGAAGTACCTTAAGGGAAAGTTGAAAAGAACTTT 509
>seq32353
Length=316
Score = 84.2 bits (92), Expect = 9e-14
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||||| |||||||||||||| || ||| |||||| | | ||||| |||||||
Sbjct 238 GAGTCGGGTTGTCTGGGAATGCAGCTCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 297
Query 100 ATTGGCCAGAGACCGATAG 118
| |||| |||||||||||
Sbjct 298 ACTGGCACGAGACCGATAG 316
>seq170501
Length=551
Score = 75.2 bits (82), Expect = 5e-11
Identities = 83/106 (78%), Gaps = 11/106 (10%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG---T 461
|| ||||||||| |||||||||||||||||||||| | |||||| |||||
Sbjct 135 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC----ACGCGAGTCAGAGGGTGCAAG 80
Query 462 CAAA--CCCGTGCGCGTAATGAAAGTGA-ACGGAGGTGGGAACCCG 504
|||| |||||| ||| ||||||||||| | ||||||||| ||||
Sbjct 79 CAAAACCCCGTG-GCGCAATGAAAGTGAGGCTGAGGTGGGATCCCG 35
>seq110954
Length=1093
Score = 75.2 bits (82), Expect = 5e-11
Identities = 58/69 (84%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672
||||||||||||||||||| || |||||| ||| ||||||||||| || || | ||||
Sbjct 124 AGGAAACTCTGGTGGAGGCCCGTAGCGGTCCTGACGTGCAAATCGGTCTTCCTACCTGGG 65
Query 673 TATAGGGGC 681
|||||| ||
Sbjct 64 TATAGGTGC 56
>seq17657
Length=8614
Score = 75.2 bits (82), Expect = 5e-11
Identities = 64/79 (81%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||||||| | | ||| |||||| | | ||||| |||||||
Sbjct 5751 GAGTCGGGTTGTTTGGGAATGCAGCCCAAGGCGGGCGGTAAACTCCATCTAAGGCTAAAT 5692
Query 100 ATTGGCCAGAGACCGATAG 118
| ||| |||||||||||
Sbjct 5691 ACCGGCATGAGACCGATAG 5673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2074010473600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |