Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq70416 123 4e-26 seq86825 91.5 2e-16 >seq70416 Length=4573 Score = 123 bits (136), Expect = 4e-26 Identities = 88/100 (88%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||| | ||| ||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 1981 GTCTCGTTTGATATTGGAATTAACCAGACAAATCGCTCCACCATCTAAGTACAGCCATGC 2040 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| | | |||| |||||||||||| |||||||| Sbjct 2041 ACCACCACCTACA-AATCGAGAAAGAGCTATTAATCTGTC 2079 >seq86825 Length=1861 Score = 91.5 bits (100), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 14/168 (8%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAGCCAAT 100 |||| |||||||||||||||||||||||||| |||| || ||| |||||| | ||| Sbjct 247 ACATTTAAGGGCATCACAGACCTGTTATTGC-TCAATCT--CATGTGGCTGAACGCC--- 194 Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACCATA---GTCGATGGGGCTATTTAGCAGGTTAA 157 ||||||||||| | | |||||| | | | | ||| | |||| | | Sbjct 193 ----CCTCTAAGAAGTCGGATGCCAACCGCACAGGGCCACAAAACTAGTCAGCATGCTTG 138 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||||| ||||||||||||||||| || | |||||||| ||| Sbjct 137 AGTCTCGTTCGCTATCGGAATTAACCAGATAATTTGCTCCACCATCTA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794644608192