Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq12541 194 5e-47 seq33547 95.1 4e-17 >seq12541 Length=12852 Score = 194 bits (214), Expect = 5e-47 Identities = 175/228 (77%), Gaps = 33/228 (14%) Strand=Plus/Minus Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 9513 TCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCCAGTAGG 9454 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||||||||| | ||| | ||||||||| |||||||||||||||||| |||||||||| Sbjct 9453 GACAGTGGGAATATTGTTCAACCATTCATGTGCGTCACTAATTAGATGAAGAGGCATTTG 9394 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 ||||| || |||||| |||||||||||| Sbjct 9393 GCTACTTT------------------------------TGGCGCTTCATTGAATTTCTTC 9364 Query 489 ACTTTGACAT---TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| || ||||||| |||||||||||||| |||||||| Sbjct 9363 ACTTTGACATCGCTCTGAGCACTCGGCAGAAATCACATCACGTCAACA 9316 >seq33547 Length=5441 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630633998336