Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq30355 178 4e-42 seq106592 125 2e-26 seq237131 120 9e-25 seq165456 84.2 7e-14 >seq30355 Length=14236 Score = 178 bits (196), Expect = 4e-42 Identities = 205/270 (76%), Gaps = 16/270 (6%) Strand=Plus/Plus Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176 |||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 1 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGACACCAC 60 Query 177 GGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 ||||||| | ||||||||||||||| ||||||| | ||| |||||| | ||||| Sbjct 61 GGTAGGCACAGAAAGTACCATCGAAAGTTGGTAGGGCACACATTCGAATGAGACGTCGCC 120 Query 237 GGCTCAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC 294 | | | ||| | |||||| | | | ||||| || ||||||||| | || | || | Sbjct 121 GCCACGAGGGCCAGCGATTGGCTTGAGGTTATCTAGAGTCACCAAGGCGGCCGG--GGCC 178 Query 295 -----GTTGGTTTTTTA-TCTAATAAATACAC---CCCTTCCGAAGTC-GGGGTTTTTAG 344 | ||| |||| | ||| |||||| ||| |||| || ||| | | | || | Sbjct 179 CCCCGGATGGGTTTTAAGTCTGATAAATGCACGCACCCT--GGAGGTCAGCGCTCGTTGG 236 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTA 374 |||||||||||||||||||| |||| |||| Sbjct 237 CATGTATTAGCTCTAGAATTGCCACAGTTA 266 >seq106592 Length=2041 Score = 125 bits (138), Expect = 2e-26 Identities = 89/101 (88%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 |||||||||||||||||||||||| |||||||||||||| | | | |||||| || Sbjct 940 CGATAACTGATTTAATGAGCCATTTGCAGTTTCACTGTACCGGCCGTGTGTACTTAAACT 881 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 880 TGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCA 841 >seq237131 Length=1136 Score = 120 bits (132), Expect = 9e-25 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||||||| | | | ||||||||| || Sbjct 795 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAATGGCCGTGTGTACTTAGACTTG 854 Query 465 CATGGCTTAATCTTTGAGACAAGCATATG 493 ||||||||||||||||||||||||||||| Sbjct 855 CATGGCTTAATCTTTGAGACAAGCATATG 883 >seq165456 Length=1335 Score = 84.2 bits (92), Expect = 7e-14 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 || || |||||| |||||||||||||||| | ||||| |||| | | ||||||| Sbjct 47 GAGTCCAACCCTGATTCCCCGTTACCCGTGGTCACCATAGTAGACACAGAAAGTACCATC 106 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||| |||||||||||||| ||| |||||| | |||||| Sbjct 107 GAAGGTTGATAGGGCAGACATTGGAATGAGACGTCGCCG 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506182479872