Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq95031 226 2e-54 seq270369 105 5e-18 >seq95031 Length=3790 Score = 226 bits (250), Expect = 2e-54 Identities = 585/876 (67%), Gaps = 39/876 (4%) Strand=Plus/Minus Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT 65770 ||||| | ||| || ||||| || |||| |||||| || | ||| || | Sbjct 2313 CAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGA 2254 Query 65771 GCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACT 65830 ||||| | ||| ||| |||| || ||| |||| || | || |||| |||||| || Sbjct 2253 GCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACG 2194 Query 65831 CCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAA 65890 ||||| || || || | || ||| ||||| | ||| || || || || ||||| Sbjct 2193 CCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAG 2134 Query 65891 TTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATG---CAC-GATACGTCGCA 65945 || || ||||| || |||||||| | || | | || | ||| ||| | || Sbjct 2133 TTAATTTCGATGATCTTGTTCAAATT-CTTGACGATTACTTTGGTCACAGATGC----CA 2079 Query 65946 ATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAA 66005 || || || |||||| | || || || ||| || ||| ||| | Sbjct 2078 GTTTTTTAAAGTCAAAA------GTCCGCTCCGGGGTGACGTACATG------TTG---A 2034 Query 66006 GGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTT 66065 | |||| || || || || || || |||| ||| || | ||| ||||||| |||| Sbjct 2033 GCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTT 1974 Query 66066 CGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGC 66125 | ||||| || || ||| | |||||||||| ||||||||| || ||||| | |||| Sbjct 1973 CTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 1914 Query 66126 ATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGT 66185 | || || ||||||| |||||| || || || || || |||||||| || | ||||| Sbjct 1913 AGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCGATAACGGCGT 1854 Query 66186 GCCAAAGAGCGC-GTGCCTTCACCGTACGTACC-GCCCTACCTTTGCGT-TCGTA--ATG 66240 |||| | | || | ||||||||| ||| | | || || ||| | || || | | Sbjct 1853 GCCACA-ACTGCTGAGCCTTCACC--ACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGG 1797 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 | |||||| | |||||| || ||||| ||| || | ||| |||| || || Sbjct 1796 T--GTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGG 1739 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATC 66358 ||||||||| ||||| || | | || ||| ||| ||| || || || || ||| Sbjct 1738 ACACATCAGAGACCAGTCCTCGT--TGCTCTCCACTCTCTTCATGAACAGGTCGGGGATC 1681 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || ||| ||||||| || || | |||| |||||||| | ||| || || | Sbjct 1680 CACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGC 1621 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || ||||| ||||| | |||||| ||||| || |||||||| |||||||| | || Sbjct 1620 TCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGT 1561 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 | ||| ||| || ||||||||||| || || |||||| | || | || ||| || Sbjct 1560 CTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGG 1501 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 |||| |||||| || ||||| ||||||||| ||||| Sbjct 1500 ACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATG 1465 >seq270369 Length=13262 Score = 105 bits (116), Expect = 5e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| |||||| || Sbjct 6568 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 6627 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || |||||||| || || Sbjct 6628 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGC 6687 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC 66225 || || |||||||||| ||| | | ||||||||| ||| ||||| ||| Sbjct 6688 GATTCGATGATGGCGTACCACACCTGCTGGGCCTTCACCACACGCTTCGCCCGACC 6743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396215020436480