Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq136 178 1e-39 seq65 123 2e-23 seq119 104 2e-17 seq142 89.7 4e-13 >seq136 Length=1264375 Score = 178 bits (196), Expect = 1e-39 Identities = 444/664 (67%), Gaps = 14/664 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| || || |||||||| ||||| || || ||||| |||||||||| |||||| || Sbjct 716856 GGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTG 716797 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| || || ||||||| ||||||||| || || || || || Sbjct 716796 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTTTCTGTCTG 716737 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTT 66228 ||| ||||| ||||| | ||| | | ||||||||| || |||| || | Sbjct 716736 GGATTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCCT- 716678 Query 66229 GCGTTCGTAATGTTCG---TAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA 66285 | ||| | || || | ||||| || || || || ||||| |||| ||| | Sbjct 716677 -CCTTC-TCATATTTGGTGTAGAGCTGCTCAAACTCCTCCCCCCAGCATTCGTCCAGCCC 716620 Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATA 66343 || |||| || ||||||||||| ||||| || | || ||| || | ||| Sbjct 716619 GGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGT--TGCTCTCCACTCTCTTCATG 716562 Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT-GCC 66402 || | ||||| ||||| || || || || ||||| | || | |||||| || | || Sbjct 716561 AACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGCTCATCCTTACCC 716502 Query 66403 GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGAT 66462 ||| || || || || ||||| ||||| | ||| |||||||| |||||||| || Sbjct 716501 GTG-TTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACAT 716443 Query 66463 GGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAA 66522 |||||| | ||| | ||| ||| || |||||||| || || || |||||| | Sbjct 716442 GGCGAAGGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTA 716383 Query 66523 GACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCC 66582 || | || ||| || || || || ||||| ||||| || ||||| |||| | | ||| Sbjct 716382 AACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCCAGCGAT-GTAGCTCC 716324 Query 66583 TCG-TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 || || | || | || || ||| || || || |||| || |||||| | Sbjct 716323 CCGTTGATCTGATGCAGCTGACCGCCACACCGATTCCTCCAGCCGATTTGGAGATGAGGG 716264 Query 66642 CACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGT 66701 |||||| || || | ||||| |||||| |||| |||| |||| || ||| Sbjct 716263 CACAATGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATGGCAAGCAGGA 716204 Query 66702 AGCA 66705 |||| Sbjct 716203 AGCA 716200 >seq65 Length=22759279 Score = 123 bits (136), Expect = 2e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | |||||||| || ||||||| Sbjct 20278156 TGGAGCGCTTCACACAGGAAGTGCAGGTGACAGAGGCCAGGTGTTTCTATGGTTTCCAGA 20278097 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | |||||||||||| ||||||| ||||||||||| | |||||||| || ||||||| || Sbjct 20278096 TCGCCATGGAGAATATCCACTCTGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 20278037 Query 61376 AGC 61378 ||| Sbjct 20278036 AGC 20278034 Score = 114 bits (126), Expect = 1e-20 Identities = 100/123 (81%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||| | || ||||||| || ||||||| Sbjct 20259177 TGGAGCGCTTCACACAGGAAGTGCAGGTGACAGAGCCAGGT-GTTTCTATGGTTTCCAGA 20259235 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | |||||||||||| ||||||| ||||||||||| | |||||||| || ||||||| || Sbjct 20259236 TCGCCATGGAGAATATCCACTCTGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 20259295 Query 61376 AGC 61378 ||| Sbjct 20259296 AGC 20259298 >seq119 Length=8001379 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||| ||||||||| | ||||||||||||||||| || Sbjct 7003615 GTGTACTCCACTATCTCTGTGCATAGATTACTGGATTTGATGGTGCCCAAATTCTGCTGG 7003556 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | |||||| || |||||||| | |||||| || || || || || || Sbjct 7003555 TTGCTCTTCCTATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGTCTGT 7003496 Query 66170 GACTCAATGATGGCGTGCCA 66189 ||||| |||||||| | ||| Sbjct 7003495 GACTCGATGATGGCATACCA 7003476 >seq142 Length=12874233 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || |||| |||||| ||||||||||| ||| |||| | Sbjct 6160044 CAGGAGGTGCAGATCCCTGAAGCACGTTCCTTCTACAGCTTCCAGATTCTCATCGAGACT 6159985 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| ||||||||||| | |||||| | || ||||| ||||| Sbjct 6159984 GTTCACTCAGAGATGTACAGCATGCTCATCAACACTTACATTAGGGA 6159938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566139381760