Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq348 241 4e-59 >seq348 Length=30689 Score = 241 bits (266), Expect = 4e-59 Identities = 672/997 (67%), Gaps = 62/997 (6%) Strand=Plus/Plus Query 1957 CTTGACGGTACTCCAAACAAAGGTAAACTT-GGTGCCAACGCTATTCTTGGTGTGTCTAT 2015 ||||| || ||||| ||||| || | || ||||| || || ||| | ||||| ||| | Sbjct 19747 CTTGATGGGACTCCTAACAAGTCTACAATTAGGTGC-AATGCAATTTTAGGTGTTTCTCT 19805 Query 2016 C-GCTGTAGC--ACGC-GCAGCTGCTGACTACCTTGAAGTT-CCACTTTACAGCTACCTT 2070 ||||| || | || ||||| ||| | |||| | |||||||| || || || Sbjct 19806 ATGCTGTTGCTAAGGCTGCAGCCAATGAGT----TGAATATGCCACTTTATAGATATGTT 19861 Query 2071 GGCGGATTCAACACTAA-AGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTC 2129 || || | | | |||| | || || || |||||||||||||| ||||||||||| Sbjct 19862 GGTGGTGTTAGCGCTAACACGGCTGCCTGTACCTATGATGAACATCATTAACGGTGGTTC 19921 Query 2130 -TCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGT----GCA 2184 ||| || ||||||||||| || || |||||||||| | | ||| ||| || Sbjct 19922 GTCATAGTGATGCTCCAATCGCATTTCAGGAATTTATGAAT---CATGCCGGTAATGGCT 19978 Query 2185 CCAA-CATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAAT 2243 || | || | || || || |||| |||||||| ||||| ||| | Sbjct 19979 GAAAGCTTTTTCTCATGCA-TTAAAGATGGAACTGAGATCTTCCATAACCTTAAAAAAGT 20037 Query 2244 CCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTT 2303 ||| | || ||||| ||| || || ||||| || ||||| || || || || ||| Sbjct 20038 TCTTCACGACCGTGGTCTTAGTACCGCTGTAGGAGATGAAGGAGGGTTTGCTCCAACTTT 20097 Query 2304 CGACGGAACTGAAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGT 2363 || ||||||||||||| | | || || || | |||||||| ||| || |||||| Sbjct 20098 GGATGGAACTGAAGATGCTTTGGATACCATTCTAAAAGCTATTGAAAAAGCGGGATATAA 20157 Query 2364 ACCAGGTAAAGACGTATTTATCGGACTTGAC-TGTGCATCATCTGAATTCTACGATGCAG 2422 ||||||| | | || | |||| || ||| ||||| | |||||||||| || || Sbjct 20158 ACCAGGTGAGCAAGTGATGATCGCTCTGGACCTGTGCTGCGGCTGAATTCTA---TGTAG 20214 Query 2423 AACGTAAAGTTTACGACTACACTAAATTTGAAGGTGAAGGCGCTGCTG------TTCGTA 2476 | | ||| || ||||| ||| |||| |||||| | | | | | | | Sbjct 20215 ATGGAAAA---TATGACTA---TAA----GAAGTTGAAGGAGATTCAGGAAAAATAAGAA 20264 Query 2477 CTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCA--- 2533 | || ||| || || ||||||| ||| | | | |||||||| ||| ||| Sbjct 20265 CAAGTGAAGAGCAGGCAGAATACCTTGCTGAACTTGCTTCTAAATACCCTATC-TCATTT 20323 Query 2534 -CTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGT 2592 |||| |||||||| ||||| |||||||||||||| |||||||| ||||||| || Sbjct 20324 TCTATTGAAGATGG-ATGGATGAAAACGACTGGGAAGGTTGGAAGGCTCTTACAGATAAA 20382 Query 2593 CTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC--ACTGCTTACC 2650 |||| | |||||| || | || || || || | ||||| || | | | || | | Sbjct 20383 GTTGGAGATAAAGTACAGCTTGTAGGGGATGA-TCTTTCGTGACCAGCGTAGAGCGT--C 20439 Query 2651 TTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGTTAACCAAATC 2709 || | ||||||| ||| | | |||||||| || ||||| ||||| |||| ||| Sbjct 20440 TTTCCAGAGGTATTAGTGAAAAATATCGCTAACTCTATTCTTATTAAAGTAAACC--ATC 20497 Query 2710 GGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCA 2769 ||||| | || |||||| | | ||| | ||| |||| | | || || | ||| | Sbjct 20498 GGTACGCTTACAGAAACTATAGCGGCTGT-GAATAGGCGCATAACGCCGGGTTTACATCT 20556 Query 2770 GTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCA 2829 ||| | || |||||||| || || |||||||| | || ||||| ||| |||| || || Sbjct 20557 GTAATGTCTCACCGTTCTGGAGAGACTGAAGA-TATACGATCGCAGATCTTGCCGTGGCG 20615 Query 2830 ACT-AACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGT-ATTGCTAAAT 2887 | || || || || ||||||||||| |||| || ||||||| || ||||| | Sbjct 20616 TTTGAATAAAGGGCAGATCAAGACAGGTTCTGCTTCAC-TAGTGACCGTAATGGCTAAGT 20674 Query 2888 ACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGA 2924 |||| ||||| ||| | || ||||| |||| ||||| Sbjct 20675 ACAA-CAATTACTTAGAATAGAAGAGGAACTAGGTGA 20710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156037688464896