Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq4387 468 2e-129
seq14590 367 4e-99
seq3375 318 2e-84
seq20664 109 2e-21
seq20594 98.7 3e-18
seq80041 78.8 3e-12
seq30 78.8 3e-12
>seq4387
Length=3233148
Score = 468 bits (518), Expect = 2e-129
Identities = 282/297 (95%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||||||||||| |||| ||| |||||| | | ||||||||||||||||||
Sbjct 1175523 CTCCCACTTATTCTACACCCCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAA 1175582
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1175583 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 1175642
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1175643 ATAGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 1175702
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175703 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 1175762
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1175763 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1175819
Score = 105 bits (116), Expect = 2e-20
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| |||| |||| | |||||||||||||| ||||
Sbjct 1176056 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGAGTTACC 1175997
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112
|||| |||| ||| ||||||||| ||||||||||||||| || |||
Sbjct 1175996 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGT 1175951
>seq14590
Length=5833377
Score = 367 bits (406), Expect = 4e-99
Identities = 223/236 (94%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2339246 AGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCTCTTGGCTGTGGTTTCGCTAGA 2339305
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2339306 TCGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 2339365
Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 2339366 CGAGGCATTTGGCTACCGATAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCAT 2339425
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2339426 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 2339481
Score = 203 bits (224), Expect = 1e-49
Identities = 126/135 (93%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2339882 AGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCCGTTCTCTTGGCTGTGGTTTCGCTAGA 2339941
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2339942 TCGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 2340001
Query 418 CGAGGCATTTGGCTA 432
| ||||||||||||
Sbjct 2340002 CAGGGCATTTGGCTA 2340016
>seq3375
Length=89888
Score = 318 bits (352), Expect = 2e-84
Identities = 347/458 (76%), Gaps = 32/458 (7%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| |||| |||| | |||||||||||||||||||
Sbjct 72065 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 72124
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||| ||| ||||||||| ||||||||||||||| || |||| | | | ||
Sbjct 72125 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGGGCAGGTC 72184
Query 127 G-GCCCGCGAA-------GGACC-------TTAACGCCAGAA---AATGGTCGGTGAAGA 168
| ||||| || || || | || |||||| || | || | |
Sbjct 72185 GCGCCCGGGACCGCAGTGGGCCCCGGGGTTTGGACTCCAGAAGCGAAAGCCCGCCGGGGG 72244
Query 169 CCAGT-TCC--GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--- 222
| | ||| || ||| ||||| | |||| ||||| |||||||||||||||
Sbjct 72245 CTCGCCTCCCTGCCTCACCCGGTAAGTGAGGAAACAATAAGAGTAGTGGTATTTCACCGG 72304
Query 223 TTGCGCCGAAACGG--------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAA 274
| ||||| ||| ||||||||||||||| ||| |||| ||| ||||||
Sbjct 72305 TGGCGCCCGTTCGGGATGGGGCCTCCCACTTATTCTAAACCCCTCATGTCTCTTCACAGT 72364
Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334
| | ||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct 72365 GCCAGACTAGAGTCATGCTCAACAGGGTCTTCTTTCCCCACTGATTCTGCCAAGCCTGTT 72424
Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394
||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 72425 CCCTTGGATGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGTTCATCCATT 72484
Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
|||| | |||||||||||||||||| ||||||||||||
Sbjct 72485 CATGTGAGTCACTAATTAGATGACGGGGCATTTGGCTA 72522
Score = 149 bits (164), Expect = 2e-33
Identities = 91/97 (94%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 73887 AAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGCTTCATTGAATTTCTTCACTTTGAA 73946
Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||| | |||||||
Sbjct 73947 ATTCAGAGCACTGGGCAGAAATCACATCGTGTCAACA 73983
>seq20664
Length=629704
Score = 109 bits (120), Expect = 2e-21
Identities = 80/93 (86%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||| |||||| |||| || |||||| | | ||||||||||||||||||
Sbjct 405424 CTCCCACTTATTTTACACCCCTCATATCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAA 405483
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329
||||||||||| |||| |||||||| |||||||
Sbjct 405484 CAGGGTCTTCTATCCCTGCTGATTCTGCCAAGC 405516
>seq20594
Length=1849262
Score = 98.7 bits (108), Expect = 3e-18
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 637369 TTGGCTAAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAAC 637428
Query 533 ATCA 536
| ||
Sbjct 637429 ACCA 637432
>seq80041
Length=986
Score = 78.8 bits (86), Expect = 3e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||||| ||||| |||||||||||||||||||||||||| |||||||||| || || ||
Sbjct 677 TTGAAGTTCTTGACTTTGACATTCAGAGCACTGGGCAGGAATCACATTGTGTTAAGAT 734
>seq30
Length=972167
Score = 78.8 bits (86), Expect = 3e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534
||||| ||||| |||||||||||||||||||||||||| |||||||||| || || ||
Sbjct 808143 TTGAAGTTCTTGACTTTGACATTCAGAGCACTGGGCAGGAATCACATTGTGTTAAGAT 808200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1633798927936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |