Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq289 156 6e-36 seq415 147 3e-33 seq24 138 2e-30 seq1824 131 3e-28 seq451 93.3 6e-17 seq509 84.2 3e-14 seq1287 80.6 4e-13 >seq289 Length=2154649 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 2065610 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 2065553 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 2065552 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 2065493 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | | || || ||| || ||| |||||||||| Sbjct 2065492 ACCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 2065433 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 2065432 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 2065380 >seq415 Length=889306 Score = 147 bits (162), Expect = 3e-33 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 91355 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 91298 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 91297 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGATTCAGCGGGTT 91238 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| || | | || || ||| || ||| |||||| ||| Sbjct 91237 ACCCGTGCCTCTCGGCGCAGAGTAGACACACGCTGATCCGCCCATTGTGGCGCGCATGCA 91178 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 91177 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 91125 Score = 138 bits (152), Expect = 2e-30 Identities = 174/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| |||||| ||||| || ||||||| |||||| | Sbjct 85804 GTACAAAGGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGTGCTTACTGGGAATT-C 85747 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 85746 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGATTCAGCGGGTT 85687 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| || | | || || ||| || ||| |||||| ||| Sbjct 85686 ACCCGTGCCTCTCGGCGCAGAGTAGACACACGCTGATCCGCCCATTGTGGCGCGCATGCA 85627 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 85626 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 85574 >seq24 Length=3779912 Score = 138 bits (152), Expect = 2e-30 Identities = 174/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 3718240 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 3718297 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 3718298 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCAATCACGAGCGGGGTTCAGTGGGTT 3718357 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | | || || ||| || ||| |||| | ||| Sbjct 3718358 ACCCGCGCCTCTCGGCGTAGGGTAGACACACGCTGATCTGCCCATTGTGGCGCACATGCA 3718417 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||| |||| |||||| ||| | || |||||| Sbjct 3718418 GCCCCGGACATCTAAGGGCATCACAAACCTATTATTG-CTCCATCTCGCGTGGC 3718470 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 || ||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 3698134 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 3698192 Query 222 AACTTCCGTGGC 233 | || |||||| Sbjct 3698193 ATCTCGCGTGGC 3698204 >seq1824 Length=136378 Score = 131 bits (144), Expect = 3e-28 Identities = 173/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||||||||| |||||| | Sbjct 119087 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACAGGGAATT-C 119030 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || || |||| | |||| ||||||| |||| | || Sbjct 119029 CTCGTTGATGGGAAATTGTTTCAATCCCCATTCCCGATCACGAGCGGGGTTCAGCGGGTT 118970 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| || || || ||||| || ||| || | | ||||| |||| Sbjct 118969 ACCCGCGCCTCTCAGCGCAGAG--TAGACACGCTGATCCGCCCATTTTGGCGCGTGTGCA 118912 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | ||| | |||| Sbjct 118911 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTTGCTTGGC 118859 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 || ||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 120619 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 120677 Query 222 AACTTCCGTGGC 233 | ||| | |||| Sbjct 120678 ATCTTGCTTGGC 120689 >seq451 Length=848638 Score = 93.3 bits (102), Expect = 6e-17 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| Sbjct 735945 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 735888 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||||| | || | || |||| | |||| ||||||| Sbjct 735887 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGA 735845 >seq509 Length=882752 Score = 84.2 bits (92), Expect = 3e-14 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 227733 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 227676 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||||| | || | || |||| | |||| ||||||| Sbjct 227675 CTCGTTGATGGGAAATAGTTTCAATCTCCAGTCCCGATCACGA 227633 >seq1287 Length=375351 Score = 80.6 bits (88), Expect = 4e-13 Identities = 60/68 (88%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| |||||||| ||||| || ||||||| |||| ||| Sbjct 346636 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGACCCGTGCTTACTGGGAA-TTC 346693 Query 61 CTCGTTGA 68 |||||||| Sbjct 346694 CTCGTTGA 346701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751772147055