Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq289 143 1e-31 seq223 140 1e-30 seq2611 136 2e-29 >seq289 Length=2154649 Score = 143 bits (158), Expect = 1e-31 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| |||| |||||||| |||||| |||||| Sbjct 2067732 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGGGGAAACCCTGGTG 2067791 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2067792 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 2067848 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 2059963 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2060022 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 2060023 ACTGGCACGAGACCGATAGTCAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 2060082 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 2060083 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 2060122 Score = 125 bits (138), Expect = 3e-26 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 2066956 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2067015 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||| ||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 2067016 ACTGGCACGAGGCCGATAGTCAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 2067075 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||| | ||| || Sbjct 2067076 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGCAA 2067112 >seq223 Length=2412706 Score = 140 bits (154), Expect = 1e-30 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| |||| |||||||| |||||| |||||| Sbjct 334845 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGGGGAAACCCTGGTG 334786 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| |||||||||| ||||| | ||||||||||||||| Sbjct 334785 GAGGCCCGCAGCGGTCCTGATGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 334729 >seq2611 Length=82667 Score = 136 bits (150), Expect = 2e-29 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 9095 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 9036 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 9035 ACTGGCACGAGACCGATAGTCAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 8976 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | |||||| || Sbjct 8975 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGGAAACG 8936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079329108350