Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq668 241 2e-61 seq2021 181 2e-43 seq885 156 7e-36 seq719 134 2e-29 seq2891 118 2e-24 seq714 107 3e-21 seq4052 95.1 2e-17 seq393 86.0 1e-14 seq2875 73.4 7e-11 >seq668 Length=790149 Score = 241 bits (266), Expect = 2e-61 Identities = 154/168 (92%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 379884 GGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 379943 Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||||||| |||| |||||||||||| |||||||||||| ||||||||||||| Sbjct 379944 GAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAACCGACATCGAAGG 380003 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 |||||||||| || |||||||||||||||||| ||||||||||| ||| Sbjct 380004 ATCAAAAAGCGACATCGCTATGAACGCTTGGCCGCCACAAGCCACTTA 380051 >seq2021 Length=103413 Score = 181 bits (200), Expect = 2e-43 Identities = 133/155 (86%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||| |||||||||||||||||| ||||||||| |||| ||| ||||||||||| Sbjct 67294 AACCCAGGTCACGTTCCCTATTAGTGAGTGAACAATGCAACACTTGGTGAATTCTGCTTT 67353 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 || | |||| ||||| |||||| |||||||||| |||| ||||||||| ||||| Sbjct 67354 AAAATTAAAGGATGAGCCAACATCGGGCGATCAAAAAGTGACGTTGCTATGAACACTTGG 67413 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||||||||||||||||||||||||||||||||||| Sbjct 67414 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 67448 >seq885 Length=704695 Score = 156 bits (172), Expect = 7e-36 Identities = 154/198 (78%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||||||||||||||||| ||| |||| || || | || ||||||| |||| Sbjct 618969 GTAGGGTAAAACTAACC-----CAT------CTAATCCAAGTTTACATTCCCTACTAGTA 618921 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 |||||||||| || |||| ||| ||| || |||| |||||||||||| ||| | Sbjct 618920 GGTGAACAATTCAGTGCTTGGTGAACACTGTATCACAATGACAGGAAGAGCCGAGATCAA 618861 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 | ||||||||||||| | ||||||||||||||| || |||||||||||||||||| ||| Sbjct 618860 TGAATCAAAAAGCAACATTGCTATGAACGCTTGGTTGTCACAAGCCAGTTATCCCT-TGG 618802 Query 217 TAACTTTTCTGGCACCTC 234 |||||||| | |||||| Sbjct 618801 TAACTTTTTGGACACCTC 618784 >seq719 Length=901982 Score = 134 bits (148), Expect = 2e-29 Identities = 82/87 (94%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 165638 CGAAATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCACCACAAGCCAGTTA 165579 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||||||| |||||| Sbjct 165578 TCCCTGTGGTAACTTTTCTGACACCTC 165552 >seq2891 Length=37014 Score = 118 bits (130), Expect = 2e-24 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 || ||||||||||||| ||| ||||||| ||||||| | | |||| || | || ||| Sbjct 22140 GATGGTCTAAACCCAGATCATGTTCCCTGTTAGTGGATCAGCAATACAGTGTTTGGTGAA 22199 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||| | | ||||||||||||| |||| || |||||| | | || ||||| Sbjct 22200 TTCTGCTACATAACAATAGGAAGAGCCGGCATCAAAAGATCAACTAAATATATCACTATG 22259 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 | ||| |||| ||||||| |||||||||| || ||||||| || Sbjct 22260 GATACTTAGCTGTCACAAGCTAGTTATCCCTTTGCTAACTTTCCT 22304 >seq714 Length=790617 Score = 107 bits (118), Expect = 3e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 113606 AAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGC 113547 Query 202 CAGT 205 |||| Sbjct 113546 CAGT 113543 >seq4052 Length=16126 Score = 95.1 bits (104), Expect = 2e-17 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||||||||| ||| ||||||| | ||||| | | ||||||| | || |||||||| Sbjct 2540 TCTAAACCCAGATCATGTTCCCTGTAAGTGGATCAGCAATCCAGTGTTTGGTGAATTCTG 2481 Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 || | || |||||||||| |||| || ||||| || | || |||||| || Sbjct 2480 CTACATAATAATAGGAAGAG----CATCAAAATATCAACAAAATATATCATTATGAATGC 2425 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 || || ||||||| ||||||||| || ||||||| || Sbjct 2424 TTAACTATCACAAGCTAGTTATCCCGTTGCTAACTTTCCT 2385 >seq393 Length=989769 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||| Sbjct 8935 AACCCAGGTCACGTTCCCTATTAGTGAGTGAACAATCCAACACTTGGTGAATTCTGCTTT 8876 Query 131 GGTATGATAGGAAGAGCCGACA 152 || | |||| ||||| ||| Sbjct 8875 AAAATTAAAGGATGAGCCAACA 8854 >seq2875 Length=32595 Score = 73.4 bits (80), Expect = 7e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| ||||||| |||||||||||||||||||||||||||| Sbjct 20079 TACTGAGCAGGATTACTATTGCAACGACGGTACATCAGTAGGGTAAAACTAACCTGTCTC 20020 Query 60 ATGAC 64 | ||| Sbjct 20019 ACGAC 20015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854132769312