Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq289 167 4e-39 seq415 152 1e-34 seq24 152 1e-34 seq1824 141 2e-31 seq451 104 4e-20 seq509 95.1 2e-17 seq212 84.2 4e-14 seq1287 82.4 1e-13 seq694 75.2 2e-11 >seq289 Length=2154649 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 2065354 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 2065411 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 2065412 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 2065471 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 2065472 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 2065531 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 2065532 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 2065591 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2065592 AAGTCCCTGCCCTTTGTA 2065609 >seq415 Length=889306 Score = 152 bits (168), Expect = 1e-34 Identities = 191/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||| |||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 91099 CTTTTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 91156 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||| |||||| ||| || | || || || | Sbjct 91157 ATGCCCTTAGATGTCCGGGGCTGCATGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 91216 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 91217 TCTGCGCCGAGAGGCACGGGTAACCCGCTGAATCCCGCTCGTGATCGGGACTGGGGATTG 91276 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 91277 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 91336 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 91337 AAGTCCCTGCCCTTTGTA 91354 Score = 143 bits (158), Expect = 5e-32 Identities = 189/258 (73%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||| |||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 85548 CTTTTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 85605 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||| |||||| ||| || | || || || | Sbjct 85606 ATGCCCTTAGATGTCCGGGGCTGCATGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 85665 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 85666 TCTGCGCCGAGAGGCACGGGTAACCCGCTGAATCCCGCTCGTGATCGGGACTGGGGATTG 85725 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || ||||||| || ||||| ||| | |||||||| Sbjct 85726 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCACGGGTCATAAGCTCACGTTGATT 85785 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 85786 AAGTCCCTGCCCTTTGTA 85803 >seq24 Length=3779912 Score = 152 bits (168), Expect = 1e-34 Identities = 193/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||| |||| |||| Sbjct 3718496 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAATAGGTTTGTG 3718439 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA-CAGAGCCAACGAGTTCATC 189 |||||||||||||| | |||| ||| | |||| ||| || |||| | | || || | Sbjct 3718438 ATGCCCTTAGATGTCCGGGGCTGCATGTGCGCCACAATGGGCAGATC-AGCGTGTGTCTA 3718380 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | | || | | ||||| | |||| | | ||| Sbjct 3718379 CCCTACGCCGAGAGGCGCGGGTAACCCACTGAACCCCGCTCGTGATTGGGACTGGGGATT 3718320 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || |||| | | |||||||||||| || |||||||||| ||||| ||| ||||||||| Sbjct 3718319 GAAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGAT 3718260 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 3718259 TAAGTCCCTGCCCTTTGTA 3718241 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/99 (82%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 3698230 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 3698173 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||| | |||| |||||||||| ||| || Sbjct 3698172 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATG 3698134 >seq1824 Length=136378 Score = 141 bits (156), Expect = 2e-31 Identities = 189/258 (73%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | ||| | ||| |||||||||||||||| Sbjct 118833 CTTCTTAGAGGGACAAGTGGCATTCAGCCAA-GCAAGATGGAG-CAATAACAGGTCTGTG 118890 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||| ||||| | | || | || || || | Sbjct 118891 ATGCCCTTAGATGTCCGGGGCTGCACACGCGCCAAAATGGGCGGATCAGCGTGTCTACT- 118949 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || | ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 118950 -CTGCGCTGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGAATGGGGATTG 119008 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || ||| | | |||||||||||| || ||||||||| ||||| ||| |||||||||| Sbjct 119009 AAACAATTTCCCATCAACGAGGAATTCCCTGTAAGCGCGGGTCATAAGCTCGCGTTGATT 119068 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 119069 AAGTCCCTGCCCTTTGTA 119086 Score = 91.5 bits (100), Expect = 3e-16 Identities = 82/99 (83%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | ||| | ||| |||||||||||||||| Sbjct 120715 CTTCTTAGAGGGACAAGTGGCATTCAGCCAA-GCAAGATGGAG-CAATAACAGGTCTGTG 120658 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||| | |||| |||||||||| ||| || Sbjct 120657 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATG 120619 >seq451 Length=848638 Score = 104 bits (114), Expect = 4e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | |||| | | |||| || |||| | | |||||||||||| || ||||||||| Sbjct 735845 TCGTGATCGGGACTGGGGATTGAAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGC 735904 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 735905 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 735944 >seq509 Length=882752 Score = 95.1 bits (104), Expect = 2e-17 Identities = 85/104 (82%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 226 CTGTCGTGCTGGGGA-TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 || ||||| | |||| | ||| |||| || |||| | | |||||||||||| || ||||| Sbjct 227630 CTCTCGTGATCGGGACTGGAG-ATTGAAACTATTTCCCATCAACGAGGAATTCCCAGTAA 227688 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| ||||| ||| |||||||||| |||||||||||||||| Sbjct 227689 GTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 227732 >seq212 Length=1418419 Score = 84.2 bits (92), Expect = 4e-14 Identities = 163/242 (67%), Gaps = 23/242 (10%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | ||| ||| || | | || | ||| ||||||||||||||| Sbjct 1188611 CTTCTTAGAGGGACAAGTGGCGTTCAGGC--ACGCGAGATGGAG-CAATAACAGGTCTGT 1188555 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||| ||| || ||| || | | | || | Sbjct 1188554 GATGCCCTTAGATGTCCGGGGCTGCAGGCGTGCCACAATGGGCGGATCTGCATGTGTCTA 1188495 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| | | ||||| | |||| | | ||| Sbjct 1188494 CCCTGCGCCGAGAGG------------------CCCCGCTCGTGATCGGGACTGGGGATT 1188453 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||| Sbjct 1188452 GAAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTTGCGTTGAT 1188393 Query 310 TA 311 || Sbjct 1188392 TA 1188391 >seq1287 Length=375351 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | | |||||||||||| || ||||||| || ||||| ||| ||| ||||||| ||| Sbjct 346709 ATTTCCCATCAACGAGGAATTCCCAGTAAGCACGGGTCATAAGCTCGCATTGATTAAGTC 346650 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 346649 CCTGCCCTTTGTA 346637 >seq694 Length=581954 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAA--CAGGTCTG 128 |||||||||||||| | ||| | |||| | | || | ||| |||||| |||||||| Sbjct 493242 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACGCGAGATGGAG-CAATAAAACAGGTCTG 493299 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||||| | |||| |||||||| | ||| || Sbjct 493300 TGATGCCCTTAGATGTCCGGGGCTGCACGCGCACCACAGTG 493340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946903744256