Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq289 412 1e-112 seq2434 233 6e-59 seq451 168 2e-39 seq1965 127 6e-27 seq37 95.1 4e-17 >seq289 Length=2154649 Score = 412 bits (456), Expect = 1e-112 Identities = 417/539 (77%), Gaps = 39/539 (7%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 2064473 CTCATTCCAATTACAGGGCCTCGAAAGAGACCTGTATTGTTATTTTTCGTCACTACCTCT 2064414 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2064413 CCGAGTCGGAAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 2064354 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 2064353 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGG 2064294 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241 | ||| ||||||||||||||||||||||||| ||| ||| ||| | |||||| | | Sbjct 2064293 CGCCTAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAAAGAATCGTCGCCGCCGCA 2064234 Query 242 AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------GG 281 |||| | ||||| | | ||||| || ||||||| || Sbjct 2064233 AAGGGCGCGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGGGACCGGGGCGGGGACGG 2064174 Query 282 AGCCCCGA-AGGGCGTTGGTTTTTTATCTAATAAATACA-----CCCCTTCCG------- 328 | |||||| | | | |||||| |||| |||||| || |||| ||| Sbjct 2064173 ATCCCCGACACCGGATGGGTTTTGGATCTGATAAATGCACGCGTCCCCGCCCGCGAGGGA 2064114 Query 329 AAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTA 385 ||||| | | || ||||||||||||||| ||||| |||| |||||||| ||| | Sbjct 2064113 GGGTCGGCGCTCGTTCGCATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTACCGGG 2064054 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || | |||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct 2064053 TGGAGCGATCAAAGGGACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGG 2063994 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 2063993 CCGTGTGTACTTAGACCTGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 2063936 >seq2434 Length=115081 Score = 233 bits (258), Expect = 6e-59 Identities = 330/459 (72%), Gaps = 65/459 (14%) Strand=Plus/Plus Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30946 CCGAGTCGGAAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 31005 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| |||||| | | ||| || |||| || | Sbjct 31006 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCTGATTCCC--TGTTACCC--GTGGT 31061 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 | ||||| | | || || | || | ||| | || Sbjct 31062 C---------ACCATGGTAGGT-------GCCGCAAAGGG----------CGCGCGATC- 31094 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAG---CCCCGAAGGGCGTTGG 299 |||| || | ||||| || ||||||| | | |||||| | ||| Sbjct 31095 -GGCC--------CG--AGGTTATCTAGAGTCACCAAAGGGAATCCCCGACCCCGGATGG 31143 Query 300 TTTTTT-ATCTAATAAATACAC-----CCCTTCCGAA-------GTCGGGGTTT-TTAGC 345 |||| |||| |||||| ||| ||| |||| ||||| | | || || Sbjct 31144 GTTTTGGATCTGATAAATGCACGCGTCCCCGCCCGAGAGGGAGGGTCGGCGCTGGTTCGC 31203 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 ||||||||||||| ||||| |||| |||||||| |||| || | |||||| || | Sbjct 31204 ATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTAG--AG---CGATCAAAGGGACCA 31258 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||||||||||||||||||||||||||||||| | || | ||||||||| ||| Sbjct 31259 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCTGTGTGTACTTAGACCTGC 31318 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| ||||||||| Sbjct 31319 ATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 31356 Score = 187 bits (206), Expect = 8e-45 Identities = 114/121 (94%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 40896 CCGAGTCGGAAATGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 40955 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 40956 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGG 41015 Query 183 C 183 | Sbjct 41016 C 41016 Score = 174 bits (192), Expect = 5e-41 Identities = 111/121 (92%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||| | |||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 39389 CCGAGTCGGAAATGGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTC 39448 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 39449 TCAGGCTCCCTTTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGG 39508 Query 183 C 183 | Sbjct 39509 C 39509 >seq451 Length=848638 Score = 168 bits (186), Expect = 2e-39 Identities = 110/121 (91%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||| | | | | |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 734604 CCGAGTCAGAAATAGATAATTTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 734545 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 734544 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGG 734485 Query 183 C 183 | Sbjct 734484 C 734484 Score = 167 bits (184), Expect = 7e-39 Identities = 137/164 (84%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || ||||||||||||||| ||||| |||| |||||||| || | || | |||||| Sbjct 734344 TTCGCATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTGG--AG---CGATCAAAGG 734290 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || ||||||||||||||||||||||||||||||||||||| | | | |||||||| Sbjct 734289 GACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGA 734230 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||| ||||||||| Sbjct 734229 CCTGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 734187 >seq1965 Length=113642 Score = 127 bits (140), Expect = 6e-27 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 45 TTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTT 104 ||| || ||||| |||| | || |||| ||||||||||| || | || || |||||| Sbjct 48643 TTTTTTATCACTTTCTCCTCAAGTTGGGAATGGGTAATTTGTGCACATGTTGTGTTCCTT 48584 Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 |||| | |||||| ||| ||||| |||||||| ||||| |||| | ||||| |||||| Sbjct 48583 GGATATAGTAGCCATTTTTCAGGATCCCTCTCTGGAATTAAACCATGATTCCACGTTACA 48524 Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 | | |||||| ||||| || |||||| |||||| |||||| ||| |||| || Sbjct 48523 TATGGTCACCATGTTAGGCACATAAAGTACCATTTAAAGTTTATAGGGTAGACATTTAAA 48464 Query 225 TGA 227 ||| Sbjct 48463 TGA 48461 >seq37 Length=4868255 Score = 95.1 bits (104), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGAT 406 |||| | ||||||||| ||| ||||||||| || | || |||| ||| ||| || Sbjct 3252848 TATTTGGTCTAGAATTGGCACAGTTATCCATATACAGGGTGGAGCTATTAAAGGAACCAT 3252907 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 || ||||||||||| | || | ||||| |||||| || || | |||||||| || Sbjct 3252908 AA-TGATTTAATGAAGCGTTTGTAGTTTTACTGTACTGACTGTCTGCACTTAGACTTGTG 3252966 Query 467 TGGCTTAATCTTTGAGACAAG--CATATGACT 496 || |||||||||||||||||| ||||| ||| Sbjct 3252967 TGTCTTAATCTTTGAGACAAGCTCATATTACT 3252998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509927592192