Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2831 131 1e-25 seq588 131 1e-25 seq362 98.7 8e-16 seq15 95.1 1e-14 seq3467 82.4 6e-11 >seq2831 Length=39540 Score = 131 bits (144), Expect = 1e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| ||||| || ||||||| |||||||| |||||||||| ||||| || Sbjct 27450 GGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTG 27509 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||| ||||| ||||||||||| | |||||| || ||||||||||| || Sbjct 27510 GTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTCTGTCTG 27569 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||| | ||| || | ||||||||| Sbjct 27570 AGACTCAATGATGGCATACCACAGCTGCTGAGCCTTCACC 27609 >seq588 Length=1544836 Score = 131 bits (144), Expect = 1e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| |||||||| ||||||| |||||||| |||||||||| ||||| || Sbjct 1280296 GGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTG 1280355 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || || ||||| ||||| ||||||||||| | |||||| || ||||||||||| || Sbjct 1280356 GTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTG 1280415 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||| | ||| || | ||||||||| Sbjct 1280416 AGACTCAATGATGGCATACCACAGCTGCTGAGCCTTCACC 1280455 >seq362 Length=1554118 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || || | ||||| || |||||| | || || ||||| |||||||| ||||||| Sbjct 601233 TGGAGCGATTTACTCAGGAAGTCCAAGTGACTGAAGCCCGTTGCTTCTACGGTTTCCAGA 601174 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||||| || ||||||| || ||||||||| | | || || || ||||||| Sbjct 601173 TTGCCATGGAAAACATCCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCA 601117 >seq15 Length=4212223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || || | |||||||| |||||| | || || ||||| |||||||| ||||||| Sbjct 2564190 TGGAGCGATTTACTCAGGAGGTCCAAGTGACCGAAGCCCGTTGCTTCTACGGTTTCCAGA 2564249 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||| ||||| || | ||||| || ||||||||| | | || || || ||||||| Sbjct 2564250 TTGCAATGGAAAACATTCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCA 2564306 >seq3467 Length=20596 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||||||||| || ||||| | |||| || ||||| | Sbjct 3137 CATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGTTCCTCTTT 3078 Query 66400 GCC-GTGATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGG 66457 || ||| | ||| ||| || ||||| || || ||||| |||||| ||||||||| Sbjct 3077 ACCAGTGTTCTTT--TTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGTTCCAGG 3020 Query 66458 TAGATGGCGAA 66468 || ||||| || Sbjct 3019 TACATGGCAAA 3009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397416451675280