Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq15521 156 6e-36 seq4462 156 6e-36 seq32350 141 1e-31 seq44214 125 1e-26 seq24714 82.4 1e-13 seq3013 80.6 4e-13 seq10030 75.2 2e-11 >seq15521 Length=621416 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 273379 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 273322 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 273321 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 273262 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | | || || ||| || ||| |||||||||| Sbjct 273261 ACCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 273202 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 273201 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 273149 >seq4462 Length=1199 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 450 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 507 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 508 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 567 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | | || || ||| || ||| |||||||||| Sbjct 568 ACCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 627 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 628 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 680 >seq32350 Length=148373 Score = 141 bits (156), Expect = 1e-31 Identities = 192/257 (75%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || |||| || ||||| ||||| ||||||||| |||||| || Sbjct 103832 TACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCGCTTACTGGGAATT-CC 103889 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||||| | || | || |||| | |||| ||||||| |||| | ||| Sbjct 103890 TCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTTA 103949 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGCG 179 |||| |||| ||||| ||| | | || || ||| | || | | ||| || |||||| Sbjct 103950 CCCGCACCTCTCGGCGCAGGGTAGACACACGCTGA-TCCACCCATTGTGTCGTGCGTGCA 104008 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||| | |||||||||||||||||||||||||||||| ||| | || ||||| ||||| Sbjct 104009 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGG-CTAAAC 104066 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 104067 GCCACTTGTCCCTCTAA 104083 Score = 140 bits (154), Expect = 5e-31 Identities = 174/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || |||| || ||||| ||||| ||||||||| |||||| || Sbjct 102567 TACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCGCTTACTGGGAATT-CC 102624 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||||| | || | || |||| | |||| ||||||| |||| | ||| Sbjct 102625 TCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTTA 102684 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| ||| ||||| ||| | | || || ||| || ||| |||||||||| | Sbjct 102685 CCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCAG 102744 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 102745 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 102796 >seq44214 Length=1357772 Score = 125 bits (138), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||| | || ||||||| ||||| ||||| ||| |||||| |||||| || Sbjct 645588 TACAAAGGGCA----CTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-CC 645641 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||||| | || | || |||| | |||| ||||||| |||| | ||| Sbjct 645642 TCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTTA 645701 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| ||| ||||| ||| | | || || ||| || ||| |||||||||| | Sbjct 645702 CCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCAG 645761 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 645762 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 645813 Score = 89.7 bits (98), Expect = 8e-16 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| Sbjct 645489 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 645546 Query 61 CTCGTTGA 68 |||||||| Sbjct 645547 CTCGTTGA 645554 >seq24714 Length=931 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 || ||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 428 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 486 Query 222 AACTTCCGTGGC 233 | || |||||| Sbjct 487 ATCTCGCGTGGC 498 Score = 78.8 bits (86), Expect = 1e-12 Identities = 53/58 (91%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| Sbjct 227 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT 283 >seq3013 Length=830 Score = 80.6 bits (88), Expect = 4e-13 Identities = 60/68 (88%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| Sbjct 105 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 48 Query 61 CTCGTTGA 68 |||||| Sbjct 47 AACGTTGA 40 >seq10030 Length=448 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/63 (87%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230 |||||||| |||| | |||||||||||||||||||||||||||||| ||| | || ||| Sbjct 323 GCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGT 265 Query 231 GGC 233 ||| Sbjct 264 GGC 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 750803999695