Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq15521 156 6e-36
seq4462 156 6e-36
seq32350 141 1e-31
seq44214 125 1e-26
seq24714 82.4 1e-13
seq3013 80.6 4e-13
seq10030 75.2 2e-11
>seq15521
Length=621416
Score = 156 bits (172), Expect = 6e-36
Identities = 178/234 (76%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| |
Sbjct 273379 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 273322
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||||| | || | || |||| | |||| ||||||| |||| | ||
Sbjct 273321 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 273262
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| ||||| ||| | | || || ||| || ||| ||||||||||
Sbjct 273261 ACCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 273202
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 273201 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 273149
>seq4462
Length=1199
Score = 156 bits (172), Expect = 6e-36
Identities = 178/234 (76%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| |
Sbjct 450 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 507
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||||| | || | || |||| | |||| ||||||| |||| | ||
Sbjct 508 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 567
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| ||| ||||| ||| | | || || ||| || ||| ||||||||||
Sbjct 568 ACCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 627
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 628 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 680
>seq32350
Length=148373
Score = 141 bits (156), Expect = 1e-31
Identities = 192/257 (75%), Gaps = 8/257 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || |||| || ||||| ||||| ||||||||| |||||| ||
Sbjct 103832 TACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCGCTTACTGGGAATT-CC 103889
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120
||||||| | || | || |||| | |||| ||||||| |||| | |||
Sbjct 103890 TCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTTA 103949
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGCG 179
|||| |||| ||||| ||| | | || || ||| | || | | ||| || ||||||
Sbjct 103950 CCCGCACCTCTCGGCGCAGGGTAGACACACGCTGA-TCCACCCATTGTGTCGTGCGTGCA 104008
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
|||| | |||||||||||||||||||||||||||||| ||| | || ||||| |||||
Sbjct 104009 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGG-CTAAAC 104066
Query 240 GGC-CATCTCCCTCGAA 255
| | | | |||||| ||
Sbjct 104067 GCCACTTGTCCCTCTAA 104083
Score = 140 bits (154), Expect = 5e-31
Identities = 174/233 (75%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || |||| || ||||| ||||| ||||||||| |||||| ||
Sbjct 102567 TACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTGCGCTTACTGGGAATT-CC 102624
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120
||||||| | || | || |||| | |||| ||||||| |||| | |||
Sbjct 102625 TCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTTA 102684
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|||| ||| ||||| ||| | | || || ||| || ||| |||||||||| |
Sbjct 102685 CCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCAG 102744
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| | |||||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 102745 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 102796
>seq44214
Length=1357772
Score = 125 bits (138), Expect = 1e-26
Identities = 171/233 (73%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
||||||||||| | || ||||||| ||||| ||||| ||| |||||| |||||| ||
Sbjct 645588 TACAAAGGGCA----CTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-CC 645641
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120
||||||| | || | || |||| | |||| ||||||| |||| | |||
Sbjct 645642 TCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTTA 645701
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|||| ||| ||||| ||| | | || || ||| || ||| |||||||||| |
Sbjct 645702 CCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCAG 645761
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| | |||||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 645762 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 645813
Score = 89.7 bits (98), Expect = 8e-16
Identities = 62/68 (91%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| |||
Sbjct 645489 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 645546
Query 61 CTCGTTGA 68
||||||||
Sbjct 645547 CTCGTTGA 645554
>seq24714
Length=931
Score = 82.4 bits (90), Expect = 1e-13
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221
|| ||| |||||||||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 428 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 486
Query 222 AACTTCCGTGGC 233
| || ||||||
Sbjct 487 ATCTCGCGTGGC 498
Score = 78.8 bits (86), Expect = 1e-12
Identities = 53/58 (91%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58
||||||||||||||||| || ||||||||||||| ||||| |||||||||| ||||||
Sbjct 227 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT 283
>seq3013
Length=830
Score = 80.6 bits (88), Expect = 4e-13
Identities = 60/68 (88%), Gaps = 2/68 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| |||
Sbjct 105 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 48
Query 61 CTCGTTGA 68
||||||
Sbjct 47 AACGTTGA 40
>seq10030
Length=448
Score = 75.2 bits (82), Expect = 2e-11
Identities = 55/63 (87%), Gaps = 1/63 (2%)
Strand=Plus/Minus
Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230
|||||||| |||| | |||||||||||||||||||||||||||||| ||| | || |||
Sbjct 323 GCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGT 265
Query 231 GGC 233
|||
Sbjct 264 GGC 262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 750803999695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |