Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq24714 93.3 2e-17 seq25972 87.8 1e-15 seq37596 78.8 5e-13 seq30399 77.0 2e-12 >seq24714 Length=931 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 798 GAACCCAAAGACTCGTGGTTTCCCGCATGCTGCCTGGCGGGTCATCGGAATAACGCCGCC 857 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||||||| | ||||||||||||||||||||||||||| Sbjct 858 GGATTGCGGGTCGGCATCGTTTACGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 915 >seq25972 Length=890 Score = 87.8 bits (96), Expect = 1e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| |||| |||| Sbjct 552 GAACCCAAAGACTCGTGGTTTCCCGCATGCTGCCCGGCGGGTCATGGGAATAATGCCGCC 493 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||||||| | ||||||||||||||||||||||||||| Sbjct 492 AGATTGCGGGTCGGCATCGTTTACGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 435 >seq37596 Length=41952 Score = 78.8 bits (86), Expect = 5e-13 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACAT-CGC 58 ||||||||||||| || |||| | | | |||| || | |||| | ||||| ||| Sbjct 21860 GAACCCAAAGACTCGTGGTTTCCTGCACGCTGCCCAGAGGGTCATAGGAATAACGCGCGC 21801 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 | |||| | ||| |||| ||||||||| ||||||||||||||||||||||||| Sbjct 21800 CGGATCGCGGGTCCGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTC 21744 >seq30399 Length=449406 Score = 77.0 bits (84), Expect = 2e-12 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| | | | |||| ||| |||| ||||| |||| Sbjct 310714 GAACCCAAAGACTCGTGGTTTCCTGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 310655 Query 60 CGATCCCTAG-TCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | | ||||||| ||||||||| ||||||||||||||||||| ||||||| Sbjct 310654 GGATCGCGGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCATCTTCGA 310596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277971508470