Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq30399 170 3e-40 >seq30399 Length=449406 Score = 170 bits (188), Expect = 3e-40 Identities = 218/293 (74%), Gaps = 18/293 (6%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86 ||| |||||||| ||||||||| |||| || ||| ||| | ||||||||||||| Sbjct 310299 CCGGATGCCCTTAACTGGGTGT-CCGGTCACCTTGGGGCCCGGAGCGTTTACTTTGAAAA 310357 Query 87 AATTAGAGTGTTCAAAGCAGG----CCTTTGC--TCGAATACATTAGCATGGAATAATAG 140 ||||||||||||||||||||| || | || |||||| ||| |||||||| | Sbjct 310358 AATTAGAGTGTTCAAAGCAGGCCGCCCGTCGCCGCTGAATACTGCAGCTAGGAATAATGG 310417 Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGA 199 |||||||| | |||||||||||||| ||||||| | | || | ||||| || ||||| Sbjct 310418 AATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCAGGGGCATGATAAAGAGGGA 310476 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | | |||||| | ||||| | ||||||| |||||||||| ||||| Sbjct 310477 TGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGTAATTCTTGGACCGGCGCAAGACGG 310536 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 310537 ACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 310588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913697488704