Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq18384 143 1e-31 seq7953 100 1e-18 seq6983 100 1e-18 >seq18384 Length=957298 Score = 143 bits (158), Expect = 1e-31 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| |||| |||||||| |||||| |||||| Sbjct 34399 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGGGGAAACCCTGGTG 34458 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 34459 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 34515 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 33600 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 33659 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 33660 ACTGGCACGAGACCGATAGTCAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 33719 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 33720 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 33759 >seq7953 Length=6969 Score = 100 bits (110), Expect = 1e-18 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||| | | ||||| |||||||| |||| ||||||||||| ||||||| | Sbjct 5319 GGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGACCGATAGTCAACAAGTACCG 5260 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAA 191 ||| ||||| ||||||| |||||| | |||||||| || || ||||||| ||| | | Sbjct 5259 TGAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGA 5200 Query 192 GGGAAGCG 199 || || || Sbjct 5199 GGTAAACG 5192 >seq6983 Length=269374 Score = 100 bits (110), Expect = 1e-18 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 ||||||||||||| | || |||| |||||| | | ||||| |||||||| |||| |||| Sbjct 84178 TTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGA 84119 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 84118 CCGATAGTCAACAAGTATCGTGAGGGAAAGTTGAAAAGAACTTTG 84074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076478489150