Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq32350 226 5e-57
seq15521 226 5e-57
seq4462 226 5e-57
seq44214 224 2e-56
seq24714 221 2e-55
seq10030 210 3e-52
seq25972 158 2e-36
seq13827 114 2e-23
seq10974 82.4 1e-13
>seq32350
Length=148373
Score = 226 bits (250), Expect = 5e-57
Identities = 199/245 (81%), Gaps = 5/245 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| ||
Sbjct 102726 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 102784
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| || | | ||||| | |||| | |||||||||||||| | || ||| | |
Sbjct 102785 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 102843
Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| | ||||||| || | |||||||||||||||||||| |||||||||||||
Sbjct 102844 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 102903
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 102904 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 102963
Query 254 CTGTC 258
|||||
Sbjct 102964 CTGTC 102968
Score = 86.0 bits (94), Expect = 1e-14
Identities = 80/99 (81%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| || |||||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 103991 CATTGTGTCGTGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 104049
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
| | || ||||| | |||| | ||||||||||||||
Sbjct 104050 ATC-TCGCGTGGCTAAACGCCACTTGTCCCTCTAAGAAG 104087
>seq15521
Length=621416
Score = 226 bits (250), Expect = 5e-57
Identities = 199/245 (81%), Gaps = 5/245 (2%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| ||
Sbjct 273219 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 273161
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| || | | ||||| | |||| | |||||||||||||| | || ||| | |
Sbjct 273160 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 273102
Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| | ||||||| || | |||||||||||||||||||| |||||||||||||
Sbjct 273101 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 273042
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 273041 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 272982
Query 254 CTGTC 258
|||||
Sbjct 272981 CTGTC 272977
>seq4462
Length=1199
Score = 226 bits (250), Expect = 5e-57
Identities = 199/245 (81%), Gaps = 5/245 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| ||
Sbjct 610 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 668
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| || | | ||||| | |||| | |||||||||||||| | || ||| | |
Sbjct 669 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 727
Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| | ||||||| || | |||||||||||||||||||| |||||||||||||
Sbjct 728 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 787
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 788 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 847
Query 254 CTGTC 258
|||||
Sbjct 848 CTGTC 852
>seq44214
Length=1357772
Score = 224 bits (248), Expect = 2e-56
Identities = 198/244 (81%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| ||
Sbjct 645743 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 645801
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| || | | ||||| | |||| | |||||||||||||| | || ||| | |
Sbjct 645802 ATCTCGCGT-GGCTGAATGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACAGGG 645860
Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| | ||||||| || | |||||||||||||||||||| |||||||||||||
Sbjct 645861 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 645920
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 645921 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 645980
Query 254 CTGT 257
||||
Sbjct 645981 CTGT 645984
>seq24714
Length=931
Score = 221 bits (244), Expect = 2e-55
Identities = 198/245 (81%), Gaps = 5/245 (2%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| ||
Sbjct 428 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 486
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136
| || | | ||||| | |||| | |||||||||||||| | || ||| | |
Sbjct 487 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 545
Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| | |||||||||| | |||||||||||||||||||| | |||||||||||
Sbjct 546 CCGCGTAACTATTTAGCAAACTGGAGTCTCGTTCGTTATCGGAATGATCCAGACAAATCG 605
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 606 CTTCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 665
Query 254 CTGTC 258
|||||
Sbjct 666 CTGTC 670
>seq10030
Length=448
Score = 210 bits (232), Expect = 3e-52
Identities = 190/236 (81%), Gaps = 5/236 (2%)
Strand=Plus/Minus
Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT 85
|||||||| |||| | ||||||||||||||||||||||||||||||| || | || | |
Sbjct 323 GCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCCATCTCGCGT 265
Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG---C 142
||||| | |||| | |||||||||||||| || ||| | | | | |
Sbjct 264 -GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAATGCCGACCGCACGGGGCCGCGTAAC 206
Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202
||||||||| | | |||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 205 TATTTAGCAAGCTGGAGTCTCGTTCGTTATCGGAATGATCCAGACAAATCTCTCCACCAA 146
Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 145 CTAAGAACGGCCATGCACCACCACCCACAGAATTGAGAAAGAGCTATCAATCCGTC 90
>seq25972
Length=890
Score = 158 bits (174), Expect = 2e-36
Identities = 95/100 (95%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 779 GTCTCGTTCGTTATCGGAATGAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 720
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| |||||| ||||||||||||||||| |||
Sbjct 719 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCCGTC 680
>seq13827
Length=477882
Score = 114 bits (126), Expect = 2e-23
Identities = 78/88 (89%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230
||| ||| ||||||| ||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 67879 ATCAGAAGGAACCAGAAAAATCGGTCCACTAACTAAGAATGGCCATGCACCACCACCCAC 67938
Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| |||||||||||||||||||||
Sbjct 67939 AGAATCGAGAAAGAGCTATCAATCTGTC 67966
>seq10974
Length=1819082
Score = 82.4 bits (90), Expect = 1e-13
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1618594 GGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTATCAATCTGTC 1618547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795532748613
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |