Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq32350 226 5e-57 seq15521 226 5e-57 seq4462 226 5e-57 seq44214 224 2e-56 seq24714 221 2e-55 seq10030 210 3e-52 seq25972 158 2e-36 seq13827 114 2e-23 seq10974 82.4 1e-13 >seq32350 Length=148373 Score = 226 bits (250), Expect = 5e-57 Identities = 199/245 (81%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 102726 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 102784 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | | ||||| | |||| | |||||||||||||| | || ||| | | Sbjct 102785 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 102843 Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||||||| || | |||||||||||||||||||| ||||||||||||| Sbjct 102844 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 102903 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 102904 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 102963 Query 254 CTGTC 258 ||||| Sbjct 102964 CTGTC 102968 Score = 86.0 bits (94), Expect = 1e-14 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| || |||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 103991 CATTGTGTCGTGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 104049 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | | || ||||| | |||| | |||||||||||||| Sbjct 104050 ATC-TCGCGTGGCTAAACGCCACTTGTCCCTCTAAGAAG 104087 >seq15521 Length=621416 Score = 226 bits (250), Expect = 5e-57 Identities = 199/245 (81%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 273219 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 273161 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | | ||||| | |||| | |||||||||||||| | || ||| | | Sbjct 273160 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 273102 Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||||||| || | |||||||||||||||||||| ||||||||||||| Sbjct 273101 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 273042 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 273041 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 272982 Query 254 CTGTC 258 ||||| Sbjct 272981 CTGTC 272977 >seq4462 Length=1199 Score = 226 bits (250), Expect = 5e-57 Identities = 199/245 (81%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 610 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 668 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | | ||||| | |||| | |||||||||||||| | || ||| | | Sbjct 669 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 727 Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||||||| || | |||||||||||||||||||| ||||||||||||| Sbjct 728 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 787 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 788 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 847 Query 254 CTGTC 258 ||||| Sbjct 848 CTGTC 852 >seq44214 Length=1357772 Score = 224 bits (248), Expect = 2e-56 Identities = 198/244 (81%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 645743 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 645801 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | | ||||| | |||| | |||||||||||||| | || ||| | | Sbjct 645802 ATCTCGCGT-GGCTGAATGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACAGGG 645860 Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | ||||||| || | |||||||||||||||||||| ||||||||||||| Sbjct 645861 CCGCGTAACTATTTAACAAGCCGGAGTCTCGTTCGTTATCGGAATGAACCAGACAAATCG 645920 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 645921 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 645980 Query 254 CTGT 257 |||| Sbjct 645981 CTGT 645984 >seq24714 Length=931 Score = 221 bits (244), Expect = 2e-55 Identities = 198/245 (81%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 428 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCC 486 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | | ||||| | |||| | |||||||||||||| | || ||| | | Sbjct 487 ATCTCGCGT-GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAACGCCGACCGCACGGGG 545 Query 137 TGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||| | |||||||||||||||||||| | ||||||||||| Sbjct 546 CCGCGTAACTATTTAGCAAACTGGAGTCTCGTTCGTTATCGGAATGATCCAGACAAATCG 605 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 || ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 606 CTTCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAAT 665 Query 254 CTGTC 258 ||||| Sbjct 666 CTGTC 670 >seq10030 Length=448 Score = 210 bits (232), Expect = 3e-52 Identities = 190/236 (81%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT 85 |||||||| |||| | ||||||||||||||||||||||||||||||| || | || | | Sbjct 323 GCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCCATCTCGCGT 265 Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG---C 142 ||||| | |||| | |||||||||||||| || ||| | | | | | Sbjct 264 -GGCTGAACGCCACTTGTCCCTCTAAGAAGTTGAATGCCGACCGCACGGGGCCGCGTAAC 206 Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||| | | |||||||||||||||||||| | ||||||||||| ||||||||| Sbjct 205 TATTTAGCAAGCTGGAGTCTCGTTCGTTATCGGAATGATCCAGACAAATCTCTCCACCAA 146 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 145 CTAAGAACGGCCATGCACCACCACCCACAGAATTGAGAAAGAGCTATCAATCCGTC 90 >seq25972 Length=890 Score = 158 bits (174), Expect = 2e-36 Identities = 95/100 (95%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 779 GTCTCGTTCGTTATCGGAATGAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 720 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||| ||| Sbjct 719 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCCGTC 680 >seq13827 Length=477882 Score = 114 bits (126), Expect = 2e-23 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 ||| ||| ||||||| ||||| ||||| ||||||||| ||||||||||||||||||| Sbjct 67879 ATCAGAAGGAACCAGAAAAATCGGTCCACTAACTAAGAATGGCCATGCACCACCACCCAC 67938 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||||||||||||||||||| Sbjct 67939 AGAATCGAGAAAGAGCTATCAATCTGTC 67966 >seq10974 Length=1819082 Score = 82.4 bits (90), Expect = 1e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1618594 GGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTATCAATCTGTC 1618547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795532748613