Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq21325 242 6e-62
seq30144 199 7e-49
seq13512 147 4e-33
seq19761 122 1e-25
seq23661 105 1e-20
seq72300 89.7 9e-16
seq28339 73.4 7e-11
>seq21325
Length=509105
Score = 242 bits (268), Expect = 6e-62
Identities = 154/167 (92%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 302858 GGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 302799
Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160
|||||||||| |||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct 302798 AACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAACCGACATCGAAGGA 302739
Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207
||||||||| ||||||||||||||||||||| ||||||| ||| |||
Sbjct 302738 TCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAACCACTTA 302692
>seq30144
Length=986368
Score = 199 bits (220), Expect = 7e-49
Identities = 137/155 (88%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
||||||| |||||||||||||||||| |||||||||||||| ||| || ||||||||
Sbjct 451368 AACCCAGGTCACGTTCCCTATTAGTGAGTGAACAATCCAACACTTGGTGATTTCTGCTTT 451309
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
|||| |||||||||| ||||||||||||||||||| |||| ||||||||| |||||
Sbjct 451308 AAAATGAAAGGAAGAGCCAACATCGAAGGATCAAAAAGTGACGTTGCTATGAACACTTGG 451249
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
|||||||||||||||||||||||| ||||||||||
Sbjct 451248 CTGCCACAAGCCAGTTATCCCTGTCGTAACTTTTC 451214
>seq13512
Length=556525
Score = 147 bits (162), Expect = 4e-33
Identities = 146/188 (78%), Gaps = 12/188 (6%)
Strand=Plus/Plus
Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96
||||||||||||||||| ||| |||| || || | || ||||||| ||||
Sbjct 301613 GTAGGGTAAAACTAACC-----CAT------CTAATCCAAGTTTACATTCCCTACTAGTA 301661
Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156
|||||||||| | |||| ||| |||| || |||| |||||||||||| ||| |
Sbjct 301662 GGTGAACAATTCTGTGCTTGGTGAACTCTGTATCACAATGACAGGAAGAGCCGAGATCAA 301721
Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216
| ||||||||||||| | ||||||||||||||| || |||||||||||||| ||| |||
Sbjct 301722 TGAATCAAAAAGCAACATTGCTATGAACGCTTGGTTGTCACAAGCCAGTTATACCT-TGG 301780
Query 217 TAACTTTT 224
||||||||
Sbjct 301781 TAACTTTT 301788
>seq19761
Length=112691
Score = 122 bits (134), Expect = 1e-25
Identities = 96/116 (83%), Gaps = 7/116 (6%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||| ||| ||||||||||||||| ||||||| | ||||||||| | || |||
Sbjct 51763 GAATTCTGTTTCACAATGATAGGAAGAGCCATCATCGAAAGCTCAAAAAGCGATGTTGCT 51704
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 51703 TTGAACGCTTGGC-------AGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 51655
>seq23661
Length=1590
Score = 105 bits (116), Expect = 1e-20
Identities = 158/223 (71%), Gaps = 11/223 (5%)
Strand=Plus/Minus
Query 6 AGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCTCATGA 63
||| ||||||| ||| | ||| | ||||||| |||||||| || | ||
Sbjct 907 AGCAGAATTACTGTTGCATCAACGCAGACATCAGTTAAATAAAACTATCCAGA-----GA 853
Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123
||||||||||||| ||| ||||||| ||||||| | | ||||||| | || |||||
Sbjct 852 TGGTCTAAACCCAGATCATGTTCCCTGTTAGTGGATCAGCAATCCAGTGTTTGGTGAATT 793
Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183
||||| | || ||||||| || |||| || ||||| || | || ||||||
Sbjct 792 CTGCTACATAATAATAGGAATAG----CATCAAAATATCAACAAAATATATCATTATGAA 737
Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226
|||| || ||||||| |||||||||| || ||||||| ||
Sbjct 736 TGCTTAACTATCACAAGCTAGTTATCCCTTTGCTAACTTTCCT 694
>seq72300
Length=226
Score = 89.7 bits (98), Expect = 9e-16
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
||||| | | ||||||| | || |||||||||| | || | ||||||||||| ||
Sbjct 1 AGTGGATCAGCAATCCAGTGTTTGGTGAATTCTGCTACATAATAACAGGAAGAGCCGGCA 60
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
|| || |||||| | | || ||||||| ||| |||| ||||||| ||||||||||
Sbjct 61 TCAAAAGATCAACTAAATATATCACTATGAATACTTAGCTGTCACAAGCTAGTTATCCCT 120
Query 213 GTGGTAACTTTTCT 226
|| ||||||| ||
Sbjct 121 TTGCTAACTTTCCT 134
>seq28339
Length=1024
Score = 73.4 bits (80), Expect = 7e-11
Identities = 72/93 (77%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193
|| ||||||||||||| |||| || |||| | || | |||||||| |||| ||||
Sbjct 688 ATAATAGGAAGAGCCGGCATCAAAAGATCTACAAAATATAGGGCTATGAATGCTTAGCTG 629
Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226
||||||| ||||||| || || ||||||| ||
Sbjct 628 TCACAAGCTAGTTATCTCTTTGCTAACTTTCCT 596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 852997305888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |