Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq21325 242 6e-62 seq30144 199 7e-49 seq13512 147 4e-33 seq19761 122 1e-25 seq23661 105 1e-20 seq72300 89.7 9e-16 seq28339 73.4 7e-11 >seq21325 Length=509105 Score = 242 bits (268), Expect = 6e-62 Identities = 154/167 (92%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 302858 GGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 302799 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 |||||||||| |||| |||||||||||| |||||||||||| |||||||||||||| Sbjct 302798 AACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAACCGACATCGAAGGA 302739 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||| ||||||||||||||||||||| ||||||| ||| ||| Sbjct 302738 TCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAACCACTTA 302692 >seq30144 Length=986368 Score = 199 bits (220), Expect = 7e-49 Identities = 137/155 (88%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||| |||||||||||||||||| |||||||||||||| ||| || |||||||| Sbjct 451368 AACCCAGGTCACGTTCCCTATTAGTGAGTGAACAATCCAACACTTGGTGATTTCTGCTTT 451309 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||| |||||||||| ||||||||||||||||||| |||| ||||||||| ||||| Sbjct 451308 AAAATGAAAGGAAGAGCCAACATCGAAGGATCAAAAAGTGACGTTGCTATGAACACTTGG 451249 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||||||||||||||||||||||| |||||||||| Sbjct 451248 CTGCCACAAGCCAGTTATCCCTGTCGTAACTTTTC 451214 >seq13512 Length=556525 Score = 147 bits (162), Expect = 4e-33 Identities = 146/188 (78%), Gaps = 12/188 (6%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||||||||||||||||| ||| |||| || || | || ||||||| |||| Sbjct 301613 GTAGGGTAAAACTAACC-----CAT------CTAATCCAAGTTTACATTCCCTACTAGTA 301661 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 |||||||||| | |||| ||| |||| || |||| |||||||||||| ||| | Sbjct 301662 GGTGAACAATTCTGTGCTTGGTGAACTCTGTATCACAATGACAGGAAGAGCCGAGATCAA 301721 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 | ||||||||||||| | ||||||||||||||| || |||||||||||||| ||| ||| Sbjct 301722 TGAATCAAAAAGCAACATTGCTATGAACGCTTGGTTGTCACAAGCCAGTTATACCT-TGG 301780 Query 217 TAACTTTT 224 |||||||| Sbjct 301781 TAACTTTT 301788 >seq19761 Length=112691 Score = 122 bits (134), Expect = 1e-25 Identities = 96/116 (83%), Gaps = 7/116 (6%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||| ||| ||||||||||||||| ||||||| | ||||||||| | || ||| Sbjct 51763 GAATTCTGTTTCACAATGATAGGAAGAGCCATCATCGAAAGCTCAAAAAGCGATGTTGCT 51704 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 51703 TTGAACGCTTGGC-------AGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 51655 >seq23661 Length=1590 Score = 105 bits (116), Expect = 1e-20 Identities = 158/223 (71%), Gaps = 11/223 (5%) Strand=Plus/Minus Query 6 AGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCTCATGA 63 ||| ||||||| ||| | ||| | ||||||| |||||||| || | || Sbjct 907 AGCAGAATTACTGTTGCATCAACGCAGACATCAGTTAAATAAAACTATCCAGA-----GA 853 Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 ||||||||||||| ||| ||||||| ||||||| | | ||||||| | || ||||| Sbjct 852 TGGTCTAAACCCAGATCATGTTCCCTGTTAGTGGATCAGCAATCCAGTGTTTGGTGAATT 793 Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 ||||| | || ||||||| || |||| || ||||| || | || |||||| Sbjct 792 CTGCTACATAATAATAGGAATAG----CATCAAAATATCAACAAAATATATCATTATGAA 737 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 |||| || ||||||| |||||||||| || ||||||| || Sbjct 736 TGCTTAACTATCACAAGCTAGTTATCCCTTTGCTAACTTTCCT 694 >seq72300 Length=226 Score = 89.7 bits (98), Expect = 9e-16 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||| | | ||||||| | || |||||||||| | || | ||||||||||| || Sbjct 1 AGTGGATCAGCAATCCAGTGTTTGGTGAATTCTGCTACATAATAACAGGAAGAGCCGGCA 60 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || || |||||| | | || ||||||| ||| |||| ||||||| |||||||||| Sbjct 61 TCAAAAGATCAACTAAATATATCACTATGAATACTTAGCTGTCACAAGCTAGTTATCCCT 120 Query 213 GTGGTAACTTTTCT 226 || ||||||| || Sbjct 121 TTGCTAACTTTCCT 134 >seq28339 Length=1024 Score = 73.4 bits (80), Expect = 7e-11 Identities = 72/93 (77%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 || ||||||||||||| |||| || |||| | || | |||||||| |||| |||| Sbjct 688 ATAATAGGAAGAGCCGGCATCAAAAGATCTACAAAATATAGGGCTATGAATGCTTAGCTG 629 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 ||||||| ||||||| || || ||||||| || Sbjct 628 TCACAAGCTAGTTATCTCTTTGCTAACTTTCCT 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852997305888